Improved detection of gene-microbe interactions in the mouse skin microbiota using high-resolution QTL mapping of 16S rRNA transcripts

Performing Skin Microbiome Research: A Method to the Madness

(2017) Heidi H. Kong et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Genetic Determinants of the Gut Microbiome in UK Twins

(2016) Julia K. Goodrich et al.   Cell Host & Microbe

Analysis of factors contributing to variation in the C57BL/6J fecal microbiota across German animal facilities

(2016) Philipp Rausch et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota

(2016) Jun Wang et al.   NATURE GENETICS

The effect of host genetics on the gut microbiome

(2016) Marc Jan Bonder et al.   NATURE GENETICS

Association of host genome with intestinal microbial composition in a large healthy cohort

(2016) Williams Turpin et al.   NATURE GENETICS

The protective effect of hydrogen sulfide on systemic sclerosis associated skin and lung fibrosis in mice model

(2016) Zhi Wang et al.   SpringerPlus

Use of 16S rRNA Gene-Targeted Group-Specific Primers for Real-Time PCR Analysis of Predominant Bacteria in Mouse Feces

(2015) Yun-Wen Yang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Error filtering, pair assembly and error correction for next-generation sequencing reads

(2015) Robert C. Edgar et al.   BIOINFORMATICS

Genetic associations and shared environmental effects on the skin microbiome of Korean twins

(2015) Jiyeon Si et al.   BMC GENOMICS

Aberrant Methylation Changes Detected in Cutaneous Squamous Cell Carcinoma of Immunocompetent Individuals

(2015) Liming Li et al.   CELL BIOCHEMISTRY AND BIOPHYSICS

Genetic and environmental control of host-gut microbiota interactions

(2015) Elin Org et al.   GENOME RESEARCH

Evidence for a functional vasodilatatory role for hydrogen sulphide in the human cutaneous microvasculature

(2015) Jessica L. Kutz et al.   JOURNAL OF PHYSIOLOGY-LONDON

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Analysis of intestinal microbiota in hybrid house mice reveals evolutionary divergence in a vertebrate hologenome

(2015) Jun Wang et al.   Nature Communications

Genome-Wide Association Studies of the Human Gut Microbiota

(2015) Emily R. Davenport et al.   PLoS One

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

Dietary effects on human gut microbiome diversity

(2014) Zhenjiang Xu et al.   BRITISH JOURNAL OF NUTRITION

Emerging roles of Jab1/CSN5 in DNA damage response, DNA repair, and cancer

(2014) Yunbao Pan et al.   CANCER BIOLOGY & THERAPY

Human Genetics Shape the Gut Microbiome

(2014) Julia K. Goodrich et al.   CELL

Acinetobacter species in the skin microbiota protect against allergic sensitization and inflammation

(2014) Nanna Fyhrquist et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Sox4 Links Tumor Suppression to Accelerated Aging in Mice by Modulating Stem Cell Activation

(2014) Miguel Foronda et al.   Cell Reports

Quantitative Trait Locus Mapping Methods for Diversity Outbred Mice

(2014) D. M. Gatti et al.   G3-Genes Genomes Genetics

Induction of apoptosis in cancer cell lines by the Red Sea brine pool bacterial extracts

(2013) Sunil Sagar et al.   BMC Complementary and Alternative Medicine

The Gut Microbiotassay: a high-throughput qPCR approach combinable with next generation sequencing to study gut microbial diversity

(2013) Marie Hermann-Bank et al.   BMC GENOMICS

The role of biogeography in shaping diversity of the intestinal microbiota in house mice

(2013) Miriam Linnenbrink et al.   MOLECULAR ECOLOGY

Genome-wide mapping of gene–microbiota interactions in susceptibility to autoimmune skin blistering

(2013) Girish Srinivas et al.   Nature Communications

High-Resolution Genetic Mapping Using the Mouse Diversity Outbred Population

(2012) Karen L. Svenson et al.   GENETICS

Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis

(2012) H. H. Kong et al.   GENOME RESEARCH

Host genetic and environmental effects on mouse intestinal microbiota

(2012) James H Campbell et al.   ISME Journal

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

The role of SRY-related HMG box transcription factor 4 (SOX4) in tumorigenesis and metastasis: friend or foe?

(2012) S J Vervoort et al.   ONCOGENE

Murine Gut Microbiota Is Defined by Host Genetics and Modulates Variation of Metabolic Traits

(2012) Autumn M. McKnite et al.   PLoS One

A general and simple method for obtainingR2from generalized linear mixed-effects models

(2012) Shinichi Nakagawa et al.   Methods in Ecology and Evolution

Type 2 Helper T-Cell Cytokines Induce Morphologic and Molecular Characteristics of Atopic Dermatitis in Human Skin Equivalent

(2011) Marijke Kamsteeg et al.   AMERICAN JOURNAL OF PATHOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

QTLRel: an R Package for Genome-wide Association Studies in which Relatedness is a Concern

(2011) Riyan Cheng et al.   BMC GENETICS

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Activity of abundant and rare bacteria in a coastal ocean

(2011) B. J. Campbell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Elevated Phosphate Activates N-ras and Promotes Cell Transformation and Skin Tumorigenesis

(2010) C. E. Camalier et al.   Cancer Prevention Research

Genotype Is a Stronger Determinant than Sex of the Mouse Gut Microbiota

(2010) Amir Kovacs et al.   MICROBIAL ECOLOGY

Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors

(2010) A. K. Benson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

H-Cadherin expression reduces invasion of malignant melanoma

(2009) Silke Kuphal et al.   Pigment Cell & Melanoma Research

Failure to Replicate a Genetic Association May Provide Important Clues About Genetic Architecture

(2009) Casey S. Greene et al.   PLoS One

Topographical and Temporal Diversity of the Human Skin Microbiome

(2009) E. A. Grice et al.   SCIENCE

Bacterial Community Variation in Human Body Habitats Across Space and Time

(2009) E. K. Costello et al.   SCIENCE

Real-time PCR quantification of the predominant bacterial divisions in the distal gut of Meishan and Landrace pigs

(2008) Xiulan Guo et al.   ANAEROBE

A diversity profile of the human skin microbiota

(2008) E. A. Grice et al.   GENOME RESEARCH

Targeted inactivation of the COP9 signalosome impairs multiple stagesof T cell development

(2008) Martina Panattoni et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Substantial Alterations of the Cutaneous Bacterial Biota in Psoriatic Lesions

(2008) Zhan Gao et al.   PLoS One