Metagenomic analysis reveals potential interactions in an artificial coculture

Underlying mechanisms for syntrophic metabolism of essential enzyme cofactors in microbial communities

(2017) Margaret F Romine et al.   ISME Journal

A review of the global ecology, genomics, and biogeography of the toxic cyanobacterium, Microcystis spp.

(2016) Matthew J. Harke et al.   HARMFUL ALGAE

Complementation of Cobalamin Auxotrophy in Synechococcus sp. Strain PCC 7002 and Validation of a Putative Cobalamin RiboswitchIn Vivo

(2016) Adam A. Pérez et al.   JOURNAL OF BACTERIOLOGY

Identification and Regulation of Genes for Cobalamin Transport in the Cyanobacterium Synechococcus sp. Strain PCC 7002

(2016) Adam A. Pérez et al.   JOURNAL OF BACTERIOLOGY

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

Metagenomic Analysis Reveals Symbiotic Relationship among Bacteria in Microcystis-Dominated Community

(2016) Meili Xie et al.   Frontiers in Microbiology

Bacterial Communities Associated with Four Cyanobacterial Genera Display Structural and Functional Differences: Evidence from an Experimental Approach

(2016) Lin Zhu et al.   Frontiers in Microbiology

Role of bacteria in the production and degradation ofMicrocystiscyanopeptides

(2016) Enora Briand et al.   MicrobiologyOpen

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Enhanced annotations and features for comparing thousands ofPseudomonasgenomes in the Pseudomonas genome database

(2015) Geoffrey L. Winsor et al.   NUCLEIC ACIDS RESEARCH

Increased trehalose biosynthesis improves Mesorhizobium ciceri growth and symbiosis establishment in saline conditions

(2015) Salwa Moussaid et al.   SYMBIOSIS

Comparative genomics reveals diversified CRISPR-Cas systems of globally distributed Microcystis aeruginosa, a freshwater bloom-forming cyanobacterium

(2015) Chen Yang et al.   Frontiers in Microbiology

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

High-resolution metagenomics

(2014) Eran Mick et al.   NATURE BIOTECHNOLOGY

Cryptic carbon and sulfur cycling between surface ocean plankton

(2014) Bryndan P. Durham et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions

(2014) Jessica K. Cole et al.   Frontiers in Microbiology

MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm

(2014) Yu-Wei Wu et al.   Microbiome

Genome sequence-based species delimitation with confidence intervals and improved distance functions

(2013) Jan P Meier-Kolthoff et al.   BMC BIOINFORMATICS

Diversity and distribution of free-living and particle-associated bacterioplankton in Sandusky Bay and adjacent waters of Lake Erie Western Basin

(2013) Xiaozhen Mou et al.   JOURNAL OF GREAT LAKES RESEARCH

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

(2013) Mads Albertsen et al.   NATURE BIOTECHNOLOGY

Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots

(2013) Sujai Kumar et al.   Frontiers in Genetics

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Defining bacterial species in the genomic era: insights from the genus Acinetobacter

(2012) Jacqueline Z-M Chan et al.   BMC MICROBIOLOGY

Mutualistic interactions between vitamin B12-dependent algae and heterotrophic bacteria exhibit regulation

(2012) Elena Kazamia et al.   ENVIRONMENTAL MICROBIOLOGY

Vitamin B12 Synthesis and Salvage Pathways Were Acquired by Horizontal Gene Transfer to the Thermotogales

(2012) Kristen S. Swithers et al.   Genome Biology and Evolution

Genome Sequence of a Highly Efficient Aerobic Denitrifying Bacterium, Pseudomonas stutzeri T13

(2012) A. Li et al.   JOURNAL OF BACTERIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Microbial interactions with the cyanobacterium Microcystis aeruginosa and their dependence on temperature

(2012) Claudia Dziallas et al.   MARINE BIOLOGY

Comparative Metagenomics of Toxic Freshwater Cyanobacteria Bloom Communities on Two Continents

(2012) Morgan M. Steffen et al.   PLoS One

Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla

(2012) K. C. Wrighton et al.   SCIENCE

Synechococcus sp. Strain PCC 7002 Transcriptome: Acclimation to Temperature, Salinity, Oxidative Stress, and Mixotrophic Growth Conditions

(2012) Marcus Ludwig et al.   Frontiers in Microbiology

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Metagenome of microorganisms associated with the toxic Cyanobacteria Microcystis aeruginosa analyzed using the 454 sequencing platform

(2011) Nan Li et al.   CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY

Temperature and biotic factors influence bacterial communities associated with the cyanobacteriumMicrocystissp.

(2011) Claudia Dziallas et al.   ENVIRONMENTAL MICROBIOLOGY

Morphological and physiological changes in Microcystis aeruginosa as a result of interactions with heterotrophic bacteria

(2011) HONG SHEN et al.   FRESHWATER BIOLOGY

Assemblathon 1: A competitive assessment of de novo short read assembly methods

(2011) D. Earl et al.   GENOME RESEARCH

Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw

(2011) Rachel Mackelprang et al.   NATURE

EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

(2011) Christopher S Miller et al.   GENOME BIOLOGY

Ectoines in cell stress protection: Uses and biotechnological production

(2010) José M. Pastor et al.   BIOTECHNOLOGY ADVANCES

Compatible solute biosynthesis in cyanobacteria

(2010) Stephan Klähn et al.   ENVIRONMENTAL MICROBIOLOGY

The proteins involved in sucrose synthesis in the marine cyanobacteriumSynechococcussp. PCC 7002 are encoded by two genes transcribed from a gene cluster

(2010) Andrea C. Cumino et al.   FEBS LETTERS

Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization

(2009) Yan Zhang et al.   BMC GENOMICS

Glucosylglycerate: a secondary compatible solute common to marine cyanobacteria from nitrogen-poor environments

(2009) Stephan Klähn et al.   ENVIRONMENTAL MICROBIOLOGY

Photolysis of iron-siderophore chelates promotes bacterial-algal mutualism

(2009) S. A. Amin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Trehalose Metabolism and Signaling

(2008) Matthew J. Paul et al.   Annual Review of Plant Biology

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Metagenomic analysis of a freshwater toxic cyanobacteria bloom

(2008) Phillip B. Pope et al.   FEMS MICROBIOLOGY ECOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

High diversity of cultivable heterotrophic bacteria in association with cyanobacterial water blooms

(2008) Katri A Berg et al.   ISME Journal

Biodegradation of microcystins by aquatic Burkholderia sp. from a South Brazilian coastal lagoon

(2007) Gilmar A.F. Lemes et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY