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FactoMineR: AnRPackage for Multivariate Analysis

(2015) Sébastien Lê et al.   Journal of Statistical Software

The Split-Apply-Combine Strategy for Data Analysis

(2015) Hadley Wickham   Journal of Statistical Software

A guide to statistical analysis in microbial ecology: a community-focused, living review of multivariate data analyses

(2014) Pier Luigi Buttigieg et al.   FEMS MICROBIOLOGY ECOLOGY

Clustering of water bodies in unpolluted and polluted environments based on Escherichia coli phylogroup abundance using a simple interaction database

(2014) Nancy de Castro Stoppe et al.   GENETICS AND MOLECULAR BIOLOGY

Consistent social structure and optimal clique size revealed by social network analysis of feral goats, Capra hircus

(2013) Christina R. Stanley et al.   ANIMAL BEHAVIOUR

Effects of environmental variation and spatial distance on Bacteria, Archaea and viruses in sub-polar and arctic waters

(2013) Christian Winter et al.   ISME Journal

Comparison of Enterococcus faecium and Enterococcus faecalis Strains Isolated from Water and Clinical Samples: Antimicrobial Susceptibility and Genetic Relationships

(2013) Gonzalo Castillo-Rojas et al.   PLoS One

Pathogenic Escherichia coli Found in Sewage Treatment Plants and Environmental Waters

(2012) E. M. Anastasi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genotypic and Phenotypic Traits That Distinguish Neonatal Meningitis-Associated Escherichia coli from Fecal E. coli Isolates of Healthy Human Hosts

(2012) Catherine M. Logue et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Antimicrobial resistance, virulence profiles, and phylogenetic groups of fecal Escherichia coli isolates: A comparative analysis between dogs and their owners in Japan

(2012) Kazuki Harada et al.   COMPARATIVE IMMUNOLOGY MICROBIOLOGY AND INFECTIOUS DISEASES

10-Fold increase (2006-11) in the rate of healthy subjects with extended-spectrum  -lactamase-producing Escherichia coli faecal carriage in a Parisian check-up centre

(2012) M.-H. Nicolas-Chanoine et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Molecular phylogeny of Escherichia coli isolated from clinical samples in Hilla, Iraq

(2011) Abdul-Razzaq   AFRICAN JOURNAL OF BIOTECHNOLOGY

Commensal gut bacteria: distribution of Enterococcus species and prevalence of Escherichia coli phylogenetic groups in animals and humans in Portugal

(2011) Nuno Silva et al.   ANNALS OF MICROBIOLOGY

Phylogenetic groups, virulence genes and quinolone resistance of integron-bearing Escherichia coli strains isolated from a wastewater treatment plant

(2011) Joanna Mokracka et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Intergenic Sequence Comparison of Escherichia coli Isolates Reveals Lifestyle Adaptations but Not Host Specificity

(2011) A. P. White et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Social structure emerges via the interaction between local ecology and individual behaviour

(2011) Colby J. Tanner et al.   JOURNAL OF ANIMAL ECOLOGY

Population structure and uropathogenic virulence-associated genes of faecal Escherichia coli from healthy young and elderly adults

(2011) T. L. Vollmerhausen et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Characterization of Escherichia coli Isolates from Healthy Food Handlers in Hospital

(2011) Yanping Luo et al.   Microbial Drug Resistance

Carriage of Antibiotic-Resistant Escherichia coli Among Healthy Children and Home-Raised Chickens: A Household Study in a Resource-Limited Setting

(2011) Eleonora Riccobono et al.   Microbial Drug Resistance

A host-endoparasite network of Neotropical marine fish: are there organizational patterns?

(2011) SYBELLE BELLAY et al.   PARASITOLOGY

Differential patterns of antimicrobial resistance in population subsets of Escherichia coli isolated from waste- and surface waters

(2011) Vânia Figueira et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Phylogenetic Groups and Pathogenicity Island Markers in Fecal Escherichia coli Isolates from Asymptomatic Humans in China

(2010) B. Li et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prevalence and Persistence of Escherichia coli Strains with Uropathogenic Virulence Characteristics in Sewage Treatment Plants

(2010) E. M. Anastasi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Escherichia coli phylogenetic group determination and its application in the identification of the major animal source of fecal contamination

(2010) Camila Carlos et al.   BMC MICROBIOLOGY

Distribution of Human Commensal Escherichia coli Phylogenetic Groups

(2010) J. K. Bailey et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Commensal Escherichia coli of healthy humans: a reservoir for antibiotic-resistance determinants

(2010) J. K. Bailey et al.   JOURNAL OF MEDICAL MICROBIOLOGY

The population genetics of commensal Escherichia coli

(2010) Olivier Tenaillon et al.   NATURE REVIEWS MICROBIOLOGY

Molecular characterization of antimicrobial resistance in enterococci and Escherichia coli isolates from European wild rabbit (Oryctolagus cuniculus)

(2010) Nuno Silva et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Spread of blaCTX-M-14 Is Driven Mainly by IncK Plasmids Disseminated among Escherichia coli Phylogroups A, B1, and D in Spain

(2009) A. Valverde et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Absence of Escherichia coli Phylogenetic Group B2 Strains in Humans and Domesticated Animals from Jeonnam Province, Republic of Korea

(2009) T. Unno et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A phylogenetic group of Escherichia coli associated with active left-sided Inflammatory Bowel Disease

(2009) Andreas M Petersen et al.   BMC MICROBIOLOGY

Phylogenetic group B2 Escherichia coli strains from the bowel microbiota of Pakistani infants carry few virulence genes and lack the capacity for long-term persistence

(2009) F.L. Nowrouzian et al.   CLINICAL MICROBIOLOGY AND INFECTION

Escherichia coli shedding patterns in humans and dogs: insights into within-household transmission of phylotypes associated with urinary tract infections

(2009) P. DAMBORG et al.   EPIDEMIOLOGY AND INFECTION

Molecular Analysis of Antimicrobial-Susceptible and -Resistant Escherichia coli from Retail Meats and Human Stool and Clinical Specimens in a Rural Community Setting

(2009) Elizabeth Lyon Hannah et al.   Foodborne Pathogens and Disease

Escherichia coli Isolates from Broiler Chicken Meat, Broiler Chickens, Pork, and Pigs Share Phylogroups and Antimicrobial Resistance with Community-Dwelling Humans and Patients with Urinary Tract Infection

(2009) Lotte Jakobsen et al.   Foodborne Pathogens and Disease

Concentrations of host-specific and generic fecal markers measured by quantitative PCR in raw sewage and fresh animal feces

(2009) Sarah S. Silkie et al.   WATER RESEARCH

Evaluation of host-specific Bacteroidales 16S rRNA gene markers as a complementary tool for detecting fecal pollution in a prairie watershed

(2009) B. Fremaux et al.   WATER RESEARCH

Comparison of molecular markers to detect fresh sewage in environmental waters

(2009) W. Ahmed et al.   WATER RESEARCH

NETWORK ANALYSIS REVEALS CONTRASTING EFFECTS OF INTRASPECIFIC COMPETITION ON INDIVIDUAL VS. POPULATION DIETS

(2008) Márcio S. Araújo et al.   ECOLOGY

Characteristics of human intestinalEscherichia coliwith changing environments

(2008) David Skurnik et al.   ENVIRONMENTAL MICROBIOLOGY

Assigning Escherichia coli strains to phylogenetic groups: multi-locus sequence typing versus the PCR triplex method

(2008) David M. Gordon et al.   ENVIRONMENTAL MICROBIOLOGY

Evidence of horizontal gene transfer between human and animal commensalEscherichia colistrains identified by microarray

(2008) Elena Grasselli et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Antibiotic resistance in a very remote Amazonas community

(2008) Alessandro Bartoloni et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Prevalence and diversity of integrons and associated resistance genes in faecal Escherichia coli isolates of healthy humans in Spain

(2008) L. Vinue et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Absence of CTX-M Enzymes but High Prevalence of Clones, Including Clone ST131, among Fecal Escherichia coli Isolates from Healthy Subjects Living in the Area of Paris, France

(2008) V. Leflon-Guibout et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Structure and urovirulence characteristics of the fecal Escherichia coli population among healthy women

(2008) Eva Moreno et al.   MICROBES AND INFECTION

Virulence and antimicrobial resistance profiles among Escherichia coli strains isolated from human and animal wastewater

(2008) Montserrat Sabaté et al.   RESEARCH IN MICROBIOLOGY