Structure and Function of the Fecal Microbiota in Diarrheic Neonatal Piglets

Microbiome-based companion diagnostics: no longer science fiction?

(2016) J Raes   GUT

Association ofFusobacterium nucleatumwith immunity and molecular alterations in colorectal cancer

(2016) Katsuhiko Nosho   WORLD JOURNAL OF GASTROENTEROLOGY

Could gut microbiota serve as prognostic biomarker associated with colorectal cancer patients' survival? A pilot study on relevant mechanism

(2016) Zhiliang Wei et al.   Oncotarget

Metagenomic Sequencing with Strain-Level Resolution Implicates Uropathogenic E. coli in Necrotizing Enterocolitis and Mortality in Preterm Infants

(2016) Doyle V. Ward et al.   Cell Reports

Bacterial and Fungal Microbiota Changes Distinguish C. difficile Infection from Other Forms of Diarrhea: Results of a Prospective Inpatient Study

(2016) William Sangster et al.   Frontiers in Microbiology

Longitudinal study of the early-life fecal and nasal microbiotas of the domestic pig

(2015) Mackenzie Jonathan Slifierz et al.   BMC MICROBIOLOGY

Characterization of the bacterial gut microbiota of piglets suffering from new neonatal porcine diarrhoea

(2015) Marie Louise Hermann-Bank et al.   BMC Veterinary Research

A phylo-functional core of gut microbiota in healthy young Chinese cohorts across lifestyles, geography and ethnicities

(2015) Jiachao Zhang et al.   ISME Journal

Pathological and bacteriological characterization of neonatal porcine diarrhoea of uncertain aetiology

(2015) Jenny Larsson et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Enterococcus faeciumNCIMB 10415 Modulates Epithelial Integrity, Heat Shock Protein, and Proinflammatory Cytokine Response in Intestinal Cells

(2015) Shanti Klingspor et al.   MEDIATORS OF INFLAMMATION

QseBC, a two-component bacterial adrenergic receptor and global regulator of virulence inEnterobacteriaceaeandPasteurellaceae

(2015) W.A. Weigel et al.   Molecular Oral Microbiology

Diet shapes the gut microbiome of pigs during nursing and weaning

(2015) Steven A. Frese et al.   Microbiome

Dietary Enterococcus faecalis LAB31 Improves Growth Performance, Reduces Diarrhea, and Increases Fecal Lactobacillus Number of Weaned Piglets

(2015) Yuanliang Hu et al.   PLoS One

Fermentable non-starch polysaccharides increases the abundance of Bacteroides–Prevotella–Porphyromonas in ileal microbial community of growing pigs

(2014) E. Ivarsson et al.   Animal

Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli

(2014) James Vlasblom et al.   BIOINFORMATICS

Fluorescence in situ hybridization investigation of potentially pathogenic bacteria involved in neonatal porcine diarrhea

(2014) Beata Jonach et al.   BMC Veterinary Research

The effect of New Neonatal Porcine Diarrhoea Syndrome (NNPDS) on average daily gain and mortality in 4 Danish pig herds

(2014) Hanne Kongsted et al.   BMC Veterinary Research

Formation, Degradation, and Detoxification of Putrescine by Foodborne Bacteria: A Review

(2014) Leona Wunderlichová et al.   COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY

Neonatal Piglet Diarrhoea Associated with Enteroadherent Enterococcus hirae

(2014) J. Larsson et al.   JOURNAL OF COMPARATIVE PATHOLOGY

Assessment of fecal bacterial diversity among healthy piglets during the weaning transition

(2014) Edward Alain B. Pajarillo et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Mucosa-Associated Bacterial Microbiome of the Gastrointestinal Tract of Weaned Pigs and Dynamics Linked to Dietary Calcium-Phosphorus

(2014) Evelyne Mann et al.   PLoS One

Characterization of the Fecal Microbiota of Pigs before and after Inoculation with “Brachyspira hampsonii”

(2014) Matheus O. Costa et al.   PLoS One

Modulation of immune development and function by intestinal microbiota

(2014) Agnieszka M. Kabat et al.   TRENDS IN IMMUNOLOGY

Prevalence of Clostridium perfringens , Clostridium perfringens enterotoxin and dysbiosis in fecal samples of dogs with diarrhea

(2014) Yasushi Minamoto et al.   VETERINARY MICROBIOLOGY

Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition

(2014) Mihai Pop et al.   GENOME BIOLOGY

Feeding the Probiotic Enterococcus faecium Strain NCIMB 10415 to Piglets Specifically Reduces the Number of Escherichia coli Pathotypes That Adhere to the Gut Mucosa

(2013) Carmen Bednorz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Reduced Incidence of Prevotella and Other Fermenters in Intestinal Microflora of Autistic Children

(2013) Dae-Wook Kang et al.   PLoS One

Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis

(2013) Jose U Scher et al.   eLife

The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates

(2012) Erwin G Zoetendal et al.   ISME Journal

A metagenome-wide association study of gut microbiota in type 2 diabetes

(2012) Junjie Qin et al.   NATURE

Analyses of pig genomes provide insight into porcine demography and evolution

(2012) Martien A. M. Groenen et al.   NATURE

Effects of Gut Microbes on Nutrient Absorption and Energy Regulation

(2012) Rosa Krajmalnik-Brown et al.   NUTRITION IN CLINICAL PRACTICE

Risks Associated with High-Dose Lactobacillus rhamnosus in an Escherichia coli Model of Piglet Diarrhoea: Intestinal Microbiota and Immune Imbalances

(2012) Xiao-Qiong Li et al.   PLoS One

Comparison of the Fecal Microbiota of Healthy Horses and Horses with Colitis by High Throughput Sequencing of the V3-V5 Region of the 16S rRNA Gene

(2012) Marcio C. Costa et al.   PLoS One

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

(2012) Xochitl C Morgan et al.   GENOME BIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Comparison of Illumina paired-end and single-direction sequencing for microbial 16S rRNA gene amplicon surveys

(2011) Jeffrey J Werner et al.   ISME Journal

Ribosome-Dependent ATPase Interacts with Conserved Membrane Protein in Escherichia coli to Modulate Protein Synthesis and Oxidative Phosphorylation

(2011) Mohan Babu et al.   PLoS One

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Response of Nursery Pigs to a Synbiotic Preparation of Starch and an Anti-Escherichia coli K88 Probiotic

(2010) D. O. Krause et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

(2010) C. De Filippo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species

(2010) K. Atarashi et al.   SCIENCE

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Differential expression of Salmonella type III secretion system factors InvJ, PrgJ, SipC, SipD, SopA and SopB in cultures and in mice

(2009) H. Gong et al.   MICROBIOLOGY-SGM

Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples

(2009) James Robert White et al.   PLoS Computational Biology

The immediate environment during postnatal development has long-term impact on gut community structure in pigs

(2008) Claire L Thompson et al.   ISME Journal