Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli

The binary protein-protein interaction landscape of Escherichia coli

(2014) Seesandra V Rajagopala et al.   NATURE BIOTECHNOLOGY

The MoxR ATPase RavA and Its Cofactor ViaA Interact with the NADH:Ubiquinone Oxidoreductase I in Escherichia coli

(2014) Keith S. Wong et al.   PLoS One

Quantitative Genome-Wide Genetic Interaction Screens Reveal Global Epistatic Relationships of Protein Complexes in Escherichia coli

(2014) Mohan Babu et al.   PLoS Genetics

Network Assessor: An automated method for quantitative assessment of a network’s potential for gene function prediction

(2014) Jason Montojo   Frontiers in Genetics

Cytoscape App Store

(2013) S. Lotia et al.   BIOINFORMATICS

GeneMANIA Prediction Server 2013 Update

(2013) Khalid Zuberi et al.   NUCLEIC ACIDS RESEARCH

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

Ribosome-Dependent ATPase Interacts with Conserved Membrane Protein in Escherichia coli to Modulate Protein Synthesis and Oxidative Phosphorylation

(2011) Mohan Babu et al.   PLoS One

Genetic Interaction Maps in Escherichia coli Reveal Functional Crosstalk among Cell Envelope Biogenesis Pathways

(2011) Mohan Babu et al.   PLoS Genetics

GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop

(2010) J. Montojo et al.   BIOINFORMATICS

Phenotypic Landscape of a Bacterial Cell

(2010) Robert J. Nichols et al.   CELL

OmpA influencesEscherichia colibiofilm formation by repressing cellulose production through the CpxRA two-component system

(2009) Qun Ma et al.   ENVIRONMENTAL MICROBIOLOGY

Global networks of functional coupling in eukaryotes from comprehensive data integration

(2009) A. Alexeyenko et al.   GENOME RESEARCH

Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins

(2009) Pingzhao Hu et al.   PLOS BIOLOGY

Genetic Interaction Screens with Ordered Overexpression and Deletion Clone Sets Implicate the Escherichia coli GTPase YjeQ in Late Ribosome Biogenesis

(2008) T. L. Campbell et al.   JOURNAL OF BACTERIOLOGY

High-throughput, quantitative analyses of genetic interactions in E. coli

(2008) Athanasios Typas et al.   NATURE METHODS

EcID. A database for the inference of functional interactions in E. coli

(2008) E. Andres Leon et al.   NUCLEIC ACIDS RESEARCH

GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function

(2008) Sara Mostafavi et al.   GENOME BIOLOGY