标题
Strain profiling and epidemiology of bacterial species from metagenomic sequencing
作者
关键词
-
出版物
Nature Communications
Volume 8, Issue 1, Pages -
出版商
Springer Nature
发表日期
2017-12-18
DOI
10.1038/s41467-017-02209-5
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- OptiClust, an Improved Method for Assigning Amplicon-Based Sequence Data to Operational Taxonomic Units
- (2017) Sarah L. Westcott et al. mSphere
- Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans
- (2016) Tommi Vatanen et al. CELL
- Temporal Stability of the Human Skin Microbiome
- (2016) Julia Oh et al. CELL
- An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography
- (2016) Stephen Nayfach et al. GENOME RESEARCH
- The microbiota in adaptive immune homeostasis and disease
- (2016) Kenya Honda et al. NATURE
- Strain-level microbial epidemiology and population genomics from shotgun metagenomics
- (2016) Matthias Scholz et al. NATURE METHODS
- MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples
- (2016) Moreno Zolfo et al. NUCLEIC ACIDS RESEARCH
- Uncovering oral Neisseria tropism and persistence using metagenomic sequencing
- (2016) Claudio Donati et al. Nature Microbiology
- The gut microbiota and host health: a new clinical frontier
- (2015) Julian R Marchesi et al. GUT
- ConStrains identifies microbial strains in metagenomic datasets
- (2015) Chengwei Luo et al. NATURE BIOTECHNOLOGY
- Sigma: Strain-level inference of genomes from metagenomic analysis for biosurveillance
- (2014) Tae-Hyuk Ahn et al. BIOINFORMATICS
- PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples
- (2014) Changjin Hong et al. Microbiome
- The Impact of the Gut Microbiota on Human Health: An Integrative View
- (2012) Jose C. Clemente et al. CELL
- Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
- (2012) I. Sharon et al. GENOME RESEARCH
- A metagenome-wide association study of gut microbiota in type 2 diabetes
- (2012) Junjie Qin et al. NATURE
- Genomic variation landscape of the human gut microbiome
- (2012) Siegfried Schloissnig et al. NATURE
- Metagenomic microbial community profiling using unique clade-specific marker genes
- (2012) Nicola Segata et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- ART: a next-generation sequencing read simulator
- (2011) Weichun Huang et al. BIOINFORMATICS
- Whole-genome phylogeny of Escherichia coli/Shigella group by feature frequency profiles (FFPs)
- (2011) G. E. Sims et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species
- (2010) Claudio Donati et al. GENOME BIOLOGY
- Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths
- (2009) Marie Touchon et al. PLoS Genetics
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More