Sigma: Strain-level inference of genomes from metagenomic analysis for biosurveillance
出版年份 2014 全文链接
标题
Sigma: Strain-level inference of genomes from metagenomic analysis for biosurveillance
作者
关键词
-
出版物
BIOINFORMATICS
Volume 31, Issue 2, Pages 170-177
出版商
Oxford University Press (OUP)
发表日期
2014-09-30
DOI
10.1093/bioinformatics/btu641
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Pathoscope: Species identification and strain attribution with unassembled sequencing data
- (2013) O. E. Francis et al. GENOME RESEARCH
- Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2
- (2012) Martin Wu et al. BIOINFORMATICS
- A framework for human microbiome research
- (2012) NATURE
- Biosurveillance plan unveiled
- (2012) Jeffrey L Fox NATURE BIOTECHNOLOGY
- Performance comparison of benchtop high-throughput sequencing platforms
- (2012) Nicholas J Loman et al. NATURE BIOTECHNOLOGY
- Metagenomic microbial community profiling using unique clade-specific marker genes
- (2012) Nicola Segata et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Metagenomic abundance estimation and diagnostic testing on species level
- (2012) Martin S. Lindner et al. NUCLEIC ACIDS RESEARCH
- Genomic Comparison of Escherichia coli O104:H4 Isolates from 2009 and 2011 Reveals Plasmid, and Prophage Heterogeneity, Including Shiga Toxin Encoding Phage stx2
- (2012) Sanaa A. Ahmed et al. PLoS One
- Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences
- (2011) Bo Liu et al. BMC GENOMICS
- Taxonomic metagenome sequence assignment with structured output models
- (2011) Kaustubh R Patil et al. NATURE METHODS
- PhymmBL expanded: confidence scores, custom databases, parallelization and more
- (2011) Arthur Brady et al. NATURE METHODS
- NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy
- (2011) K. D. Pruitt et al. NUCLEIC ACIDS RESEARCH
- Accurate Genome Relative Abundance Estimation Based on Shotgun Metagenomic Reads
- (2011) Li C. Xia et al. PLoS One
- Escherichia coli (STEC) serotype O104 outbreak causing haemolytic syndrome (HUS) in Germany and France
- (2011) Salvatore Rubino et al. Journal of Infection in Developing Countries
- SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences
- (2009) M. Monzoorul Haque et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- TACOA – Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach
- (2009) Naryttza N Diaz et al. BMC BIOINFORMATICS
- MetaSim—A Sequencing Simulator for Genomics and Metagenomics
- (2008) Daniel C. Richter et al. PLoS One
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started