标题
Uncovering oral Neisseria tropism and persistence using metagenomic sequencing
作者
关键词
-
出版物
Nature Microbiology
Volume 1, Issue 7, Pages -
出版商
Springer Nature
发表日期
2016-05-27
DOI
10.1038/nmicrobiol.2016.70
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Strain-level microbial epidemiology and population genomics from shotgun metagenomics
- (2016) Matthias Scholz et al. NATURE METHODS
- MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
- (2015) Dinghua Li et al. BIOINFORMATICS
- Extensive Strain-Level Copy-Number Variation across Human Gut Microbiome Species
- (2015) Sharon Greenblum et al. CELL
- Unusual biology across a group comprising more than 15% of domain Bacteria
- (2015) Christopher T. Brown et al. NATURE
- MetaPhlAn2 for enhanced metagenomic taxonomic profiling
- (2015) Duy Tin Truong et al. NATURE METHODS
- Meningitis in adolescents: the role of commensal microbiota
- (2015) James W.B. Moir TRENDS IN MICROBIOLOGY
- Compact graphical representation of phylogenetic data and metadata with GraPhlAn
- (2015) Francesco Asnicar et al. PeerJ
- Helicobacter pylori CagA and Gastric Cancer: A Paradigm for Hit-and-Run Carcinogenesis
- (2014) Masanori Hatakeyama Cell Host & Microbe
- Identifying Neisseria Species by Use of the 50S Ribosomal Protein L6 (rplF) Gene
- (2014) J. S. Bennett et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Binning metagenomic contigs by coverage and composition
- (2014) Johannes Alneberg et al. NATURE METHODS
- Relating the metatranscriptome and metagenome of the human gut
- (2014) E. A. Franzosa et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome sequencing of disease and carriage isolates of nontypeable Haemophilus influenzae identifies discrete population structure
- (2014) M. De Chiara et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- PNAS Plus: From the Cover: Oligotyping analysis of the human oral microbiome
- (2014) A. M. Eren et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- GroopM: an automated tool for the recovery of population genomes from related metagenomes
- (2014) Michael Imelfort et al. PeerJ
- PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples
- (2014) Changjin Hong et al. Microbiome
- Pathoscope: Species identification and strain attribution with unassembled sequencing data
- (2013) O. E. Francis et al. GENOME RESEARCH
- A Culture-Independent Sequence-Based Metagenomics Approach to the Investigation of an Outbreak of Shiga-Toxigenic Escherichia coli O104:H4
- (2013) Nicholas J. Loman et al. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION
- Conservation of Meningococcal Antigens in the Genus Neisseria
- (2013) A. Muzzi et al. mBio
- PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
- (2013) Nicola Segata et al. Nature Communications
- Oral mucosal immunity
- (2013) L. Feller et al. Oral Surgery Oral Medicine Oral Pathology Oral Radiology
- Dialects of the DNA Uptake Sequence in Neisseriaceae
- (2013) Stephan A. Frye et al. PLoS Genetics
- A genomic approach to bacterial taxonomy: an examination and proposed reclassification of species within the genus Neisseria
- (2012) J. S. Bennett et al. MICROBIOLOGY-SGM
- A framework for human microbiome research
- (2012) NATURE
- A metagenome-wide association study of gut microbiota in type 2 diabetes
- (2012) Junjie Qin et al. NATURE
- Genomic variation landscape of the human gut microbiome
- (2012) Siegfried Schloissnig et al. NATURE
- Metagenomic microbial community profiling using unique clade-specific marker genes
- (2012) Nicola Segata et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads
- (2012) Toshiaki Namiki et al. NUCLEIC ACIDS RESEARCH
- Grinder: a versatile amplicon and shotgun sequence simulator
- (2012) Florent E. Angly et al. NUCLEIC ACIDS RESEARCH
- Can we, should we, eradicate the meningococcus?
- (2012) Martin C.J. Maiden et al. VACCINE
- Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples
- (2012) Nicola Segata et al. GENOME BIOLOGY
- Meta-IDBA: a de Novo assembler for metagenomic data
- (2011) Y. Peng et al. BIOINFORMATICS
- BIGSdb: Scalable analysis of bacterial genome variation at the population level
- (2011) Keith A Jolley et al. BMC BIOINFORMATICS
- The role of gut microbiota (commensal bacteria) and the mucosal barrier in the pathogenesis of inflammatory and autoimmune diseases and cancer: contribution of germ-free and gnotobiotic animal models of human diseases
- (2011) Helena Tlaskalová-Hogenová et al. Cellular & Molecular Immunology
- Population genetics and evolution of the pan-genome of Streptococcus pneumoniae
- (2011) Alessandro Muzzi et al. INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY
- NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy
- (2011) K. D. Pruitt et al. NUCLEIC ACIDS RESEARCH
- Discriminant analysis of principal components: a new method for the analysis of genetically structured populations
- (2010) Thibaut Jombart et al. BMC GENETICS
- Genome Sequencing Reveals Widespread Virulence Gene Exchange among Human Neisseria Species
- (2010) Pradeep Reddy Marri et al. PLoS One
- Correlations of oral bacterial arginine and urea catabolism with caries experience
- (2010) M. M. Nascimento et al. Oral microbiology and immunology
- The Pangenome Structure of Escherichia coli: Comparative Genomic Analysis of E. coli Commensal and Pathogenic Isolates
- (2008) D. A. Rasko et al. JOURNAL OF BACTERIOLOGY
- Helicobacter pylori virulence and the diversity of gastric cancer in Asia
- (2008) L. T. Nguyen et al. JOURNAL OF MEDICAL MICROBIOLOGY
- The role of Streptococcus pneumoniae virulence factors in host respiratory colonization and disease
- (2008) Aras Kadioglu et al. NATURE REVIEWS MICROBIOLOGY
- The immune privilege of the oral mucosa
- (2008) Natalija Novak et al. TRENDS IN MOLECULAR MEDICINE
- The impact of the neisserial DNA uptake sequences on genome evolution and stability
- (2008) Todd J Treangen et al. GENOME BIOLOGY
- Longitudinal study of meningococcal carrier rates in teenagers
- (2007) I.C. Glitza et al. INTERNATIONAL JOURNAL OF HYGIENE AND ENVIRONMENTAL HEALTH
- Toll-like receptor 4 ligation enforces tolerogenic properties of oral mucosal Langerhans cells
- (2007) Jean-Pierre Allam et al. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
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