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The role of gut microbiota (commensal bacteria) and the mucosal barrier in the pathogenesis of inflammatory and autoimmune diseases and cancer: contribution of germ-free and gnotobiotic animal models of human diseases

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Dysbiosis of the faecal microbiota in patients with Crohn's disease and their unaffected relatives

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(2011) Manimozhiyan Arumugam et al.   NATURE

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

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Clonal Analysis of the Microbiota of Severe Early Childhood Caries

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Overcoming the Heme Paradox: Heme Toxicity and Tolerance in Bacterial Pathogens

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Bacterial diversity in the oral cavity of 10 healthy individuals

(2010) Elisabeth M Bik et al.   ISME Journal

The Human Oral Microbiome

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Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing

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A human gut microbial gene catalogue established by metagenomic sequencing

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Mechanisms, diagnosis and management of hepatic encephalopathy

(2010) Ravi Prakash et al.   Nature Reviews Gastroenterology & Hepatology

Oral Biofilm Architecture on Natural Teeth

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Disordered Microbial Communities in the Upper Respiratory Tract of Cigarette Smokers

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Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

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The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies

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The Coevolution of Virulence: Tolerance in Perspective

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Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

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Hydrogen mediates suppression of colon inflammation induced by dextran sodium sulfate

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Changes in endotoxin levels in T2DM subjects on anti-diabetic therapies

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The Isolation of Bifidobacteria from Occlusal Carious Lesions in Children and Adults

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Obesity and the human microbiome

(2009) Ruth E Ley   CURRENT OPINION IN GASTROENTEROLOGY

Towards the human intestinal microbiota phylogenetic core

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(2009) I. Nasidze et al.   GENOME RESEARCH

Pyrosequencing analysis of the Oral Microflora of healthy adults

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Acceleration of Purine Degradation by Periodontal Diseases

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Metagenomic study of the oral microbiota by Illumina high-throughput sequencing

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Distribution of Tetracycline and Erythromycin Resistance Genes Among Human Oral and Fecal Metagenomic DNA

(2009) Lorna A. Seville et al.   Microbial Drug Resistance

KEGG for representation and analysis of molecular networks involving diseases and drugs

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Human gut microbiota in obesity and after gastric bypass

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Bacterial Community Variation in Human Body Habitats Across Space and Time

(2009) E. K. Costello et al.   SCIENCE

A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes

(2009) Yuzhen Ye et al.   PLoS Computational Biology

Plant Cell Wall Breakdown by Anaerobic Microorganisms from the Mammalian Digestive Tract

(2008) Harry J. Flint et al.   Annals of the New York Academy of Sciences

Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)

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Intra-individual diversity and similarity of salivary and faecal microbiota

(2008) J. Maukonen et al.   JOURNAL OF MEDICAL MICROBIOLOGY

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing

(2008) Anders F. Andersson et al.   PLoS One

A polymicrobial perspective of pulmonary infections exposes an enigmatic pathogen in cystic fibrosis patients

(2008) C. D. Sibley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients

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Evolution of Mammals and Their Gut Microbes

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Purification of extracellular acid protease and analysis of fermentation metabolites by Synergistes sp. utilizing proteinaceous solid waste from tanneries

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