Prokaryotic Responses to Ammonium and Organic Carbon Reveal Alternative CO2 Fixation Pathways and Importance of Alkaline Phosphatase in the Mesopelagic North Atlantic

Response of marine bacterioplankton pH homeostasis gene expression to elevated CO2

(2016) Carina Bunse et al.   Nature Climate Change

The Pho regulon: a huge regulatory network in bacteria

(2015) Fernando Santos-Beneit   Frontiers in Microbiology

Stimulation of growth by proteorhodopsin phototrophy involves regulation of central metabolic pathways in marine planktonic bacteria

(2014) J. Palovaara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cryptic carbon and sulfur cycling between surface ocean plankton

(2014) Bryndan P. Durham et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial control of the dark end of the biological pump

(2013) Gerhard J. Herndl et al.   Nature Geoscience

Structuring of bacterioplankton communities by specific dissolved organic carbon compounds

(2012) Laura Gómez-Consarnau et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial Versus Archaeal Origin of Extracellular Enzymatic Activity in the Northeast Atlantic Deep Waters

(2012) Federico Baltar et al.   MICROBIAL ECOLOGY

Experimental Incubations Elicit Profound Changes in Community Transcription in OMZ Bacterioplankton

(2012) Frank J. Stewart et al.   PLoS One

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

(2012) H. Teeling et al.   SCIENCE

Genomics of the Proteorhodopsin-Containing Marine Flavobacterium Dokdonia sp. Strain MED134

(2011) José M. González et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Recruitment of Members from the Rare Biosphere of Marine Bacterioplankton Communities after an Environmental Disturbance

(2011) Johanna Sjöstedt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Carboxylases in Natural and Synthetic Microbial Pathways

(2011) Tobias J. Erb   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Contribution ofCrenarchaeotaandBacteriato autotrophy in the North Atlantic interior

(2011) Marta M. Varela et al.   ENVIRONMENTAL MICROBIOLOGY

Chemoautotrophy in the ocean

(2011) Jack J. Middelburg   GEOPHYSICAL RESEARCH LETTERS

Defining seasonal marine microbial community dynamics

(2011) Jack A Gilbert et al.   ISME Journal

Evidence of prokaryotic metabolism on suspended particulate organic matter in the dark waters of the subtropical North Atlantic

(2011) Federico Baltar et al.   LIMNOLOGY AND OCEANOGRAPHY

Shedding light on processes that control particle export and flux attenuation in the twilight zone of the open ocean

(2011) Ken O. Buesseler et al.   LIMNOLOGY AND OCEANOGRAPHY

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

(2011) B. K. Swan et al.   SCIENCE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Major contribution of autotrophy to microbial carbon cycling in the deep North Atlantic’s interior

(2010) Thomas Reinthaler et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Significance of non-sinking particulate organic carbon and dark CO2fixation to heterotrophic carbon demand in the mesopelagic northeast Atlantic

(2010) Federico Baltar et al.   GEOPHYSICAL RESEARCH LETTERS

Transcriptomic analysis of a marine bacterial community enriched with dimethylsulfoniopropionate

(2010) Maria Vila-Costa et al.   ISME Journal

High bicarbonate assimilation in the dark by Arctic bacteria

(2010) Laura Alonso-Sáez et al.   ISME Journal

The pstSCAB operon for phosphate uptake is regulated by the global regulator GlxR in Corynebacterium glutamicum

(2010) Maren Panhorst et al.   JOURNAL OF BIOTECHNOLOGY

Bacterial vs. zooplankton control of sinking particle flux in the ocean's twilight zone

(2010) Deborah K. Steinberg et al.   LIMNOLOGY AND OCEANOGRAPHY

Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea

(2010) J. McCarren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Design and analysis of synthetic carbon fixation pathways

(2010) A. Bar-Even et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Cryptic Sulfur Cycle in Oxygen-Minimum-Zone Waters off the Chilean Coast

(2010) D. E. Canfield et al.   SCIENCE

High dissolved extracellular enzymatic activity in the deep central Atlantic Ocean

(2009) F Baltar et al.   AQUATIC MICROBIAL ECOLOGY

Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre

(2009) Rachel S. Poretsky et al.   ENVIRONMENTAL MICROBIOLOGY

Prokaryotic extracellular enzymatic activity in relation to biomass production and respiration in the meso- and bathypelagic waters of the (sub)tropical Atlantic

(2009) Federico Baltar et al.   ENVIRONMENTAL MICROBIOLOGY

Study of the distribution of autotrophic CO2 fixation cycles in Crenarchaeota

(2009) I. A. Berg et al.   MICROBIOLOGY-SGM

Phosphate and carbon source regulation of two PhoP-dependent glycerophosphodiester phosphodiesterase genes of Streptomyces coelicolor

(2009) F. Santos-Beneit et al.   MICROBIOLOGY-SGM

The relevance of carbon dioxide metabolism in Streptococcus thermophilus

(2009) S. Arioli et al.   MICROBIOLOGY-SGM

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

The microbial ocean from genomes to biomes

(2009) Edward F. DeLong   NATURE

Expression of the pstS gene of Streptomyces lividans is regulated by the carbon source and is partially independent of the PhoP regulator

(2008) Ana Esteban et al.   BMC MICROBIOLOGY

Bacterial Tag–Encoded FLX Amplicon Pyrosequencing (bTEFAP) for Microbiome Studies: Bacterial Diversity in the Ileum of Newly Weaned Salmonella-Infected Pigs

(2008) Scot E. Dowd et al.   Foodborne Pathogens and Disease

Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California

(2008) J Michael Beman et al.   ISME Journal

Halomonas profundus sp. nov., a new PHA-producing bacterium isolated from a deep-sea hydrothermal vent shrimp

(2008) C. Simon-Colin et al.   JOURNAL OF APPLIED MICROBIOLOGY

Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic

(2008) Hélène Agogué et al.   NATURE

Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria)

(2008) J. M. Gonzalez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The influence of sex, handedness, and washing on the diversity of hand surface bacteria

(2008) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial community gene expression in ocean surface waters

(2008) J. Frias-Lopez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA