Stimulation of growth by proteorhodopsin phototrophy involves regulation of central metabolic pathways in marine planktonic bacteria

Regulation of proteorhodopsin gene expression by nutrient limitation in the marine bacteriumVibriosp. AND4

(2013) Neelam Akram et al.   ENVIRONMENTAL MICROBIOLOGY

Ecology of marine Bacteroidetes: a comparative genomics approach

(2013) Beatriz Fernández-Gómez et al.   ISME Journal

Light-stimulated growth of proteorhodopsin-bearing sea-ice psychrophile Psychroflexus torquis is salinity dependent

(2013) Shi Feng et al.   ISME Journal

Pattern and synchrony of gene expression among sympatric marine microbial populations

(2013) E. A. Ottesen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structuring of bacterioplankton communities by specific dissolved organic carbon compounds

(2012) Laura Gómez-Consarnau et al.   ENVIRONMENTAL MICROBIOLOGY

Global abundance of microbial rhodopsins

(2012) Omri M Finkel et al.   ISME Journal

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Function and Regulation of Vibrio campbellii Proteorhodopsin: Acquired Phototrophy in a Classical Organoheterotroph

(2012) Zheng Wang et al.   PLoS One

Genomics of the Proteorhodopsin-Containing Marine Flavobacterium Dokdonia sp. Strain MED134

(2011) José M. González et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Light-induced transcriptional responses associated with proteorhodopsin-enhanced growth in a marine flavobacterium

(2011) Hiroyuki Kimura et al.   ISME Journal

Energy Starved Candidatus Pelagibacter Ubique Substitutes Light-Mediated ATP Production for Endogenous Carbon Respiration

(2011) Laura Steindler et al.   PLoS One

Constitutive Expression of the Proteorhodopsin Gene by a Flavobacterium Strain Representative of the Proteorhodopsin-Producing Microbial Community in the North Sea

(2010) T. Riedel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Enhancement of Survival and Electricity Production in an Engineered Bacterium by Light-Driven Proton Pumping

(2010) E. T. Johnson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

High bicarbonate assimilation in the dark by Arctic bacteria

(2010) Laura Alonso-Sáez et al.   ISME Journal

Coherent patterns in bacterial growth, growth efficiency, and leucine metabolism along a northeastern Pacific inshore-offshore transect

(2010) Paul A. del Giorgio et al.   LIMNOLOGY AND OCEANOGRAPHY

FragGeneScan: predicting genes in short and error-prone reads

(2010) Mina Rho et al.   NUCLEIC ACIDS RESEARCH

Proteorhodopsin Phototrophy Promotes Survival of Marine Bacteria during Starvation

(2010) Laura Gómez-Consarnau et al.   PLOS BIOLOGY

Light-dependent growth and proteorhodopsin expression byFlavobacteriaand SAR11 in experiments with Delaware coastal waters

(2009) Raphaël Lami et al.   ENVIRONMENTAL MICROBIOLOGY

Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre

(2009) Rachel S. Poretsky et al.   ENVIRONMENTAL MICROBIOLOGY

Carbohydrate Metabolism and Carbon Fixation in Roseobacter denitrificans OCh114

(2009) Kuo-Hsiang Tang et al.   PLoS One

Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria)

(2008) J. M. Gonzalez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial community gene expression in ocean surface waters

(2008) J. Frias-Lopez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation

(2008) Sean R. Eddy   PLoS Computational Biology