Genomics of the Proteorhodopsin-Containing Marine Flavobacterium Dokdonia sp. Strain MED134

Light-induced transcriptional responses associated with proteorhodopsin-enhanced growth in a marine flavobacterium

(2011) Hiroyuki Kimura et al.   ISME Journal

Complete Genome Sequences of Krokinobactersp. Strain 4H-3-7-5 and Lacinutrixsp. Strain 5H-3-7-4, Polysaccharide-Degrading Members of the Family Flavobacteriaceae

(2011) B. Klippel et al.   JOURNAL OF BACTERIOLOGY

Energy Starved Candidatus Pelagibacter Ubique Substitutes Light-Mediated ATP Production for Endogenous Carbon Respiration

(2011) Laura Steindler et al.   PLoS One

Structure of a membrane-attack complex/perforin (MACPF) family protein from the human gut symbiontBacteroides thetaiotaomicron

(2010) Qingping Xu et al.   Acta Crystallographica Section F-Structural Biology and Crystallization Communications

Constitutive Expression of the Proteorhodopsin Gene by a Flavobacterium Strain Representative of the Proteorhodopsin-Producing Microbial Community in the North Sea

(2010) T. Riedel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Enhancement of Survival and Electricity Production in an Engineered Bacterium by Light-Driven Proton Pumping

(2010) E. T. Johnson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

(2010) Nancy Y. Yu et al.   BIOINFORMATICS

Relationship between operon preference and functional properties of persistent genes in bacterial genomes

(2010) Marit S Bratlie et al.   BMC GENOMICS

The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation

(2010) Qi-Long Qin et al.   BMC GENOMICS

Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction

(2010) Robert M Morris et al.   ISME Journal

Proteorhodopsin Phototrophy Promotes Survival of Marine Bacteria during Starvation

(2010) Laura Gómez-Consarnau et al.   PLOS BIOLOGY

Novel Features of the Polysaccharide-Digesting Gliding Bacterium Flavobacterium johnsoniae as Revealed by Genome Sequence Analysis

(2009) M. J. McBride et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Light-dependent growth and proteorhodopsin expression byFlavobacteriaand SAR11 in experiments with Delaware coastal waters

(2009) Raphaël Lami et al.   ENVIRONMENTAL MICROBIOLOGY

Photoheterotrophy in marine prokaryotes

(2009) M. V. Zubkov   JOURNAL OF PLANKTON RESEARCH

MEROPS: the peptidase database

(2009) Neil D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

Assembling the Marine Metagenome, One Cell at a Time

(2009) Tanja Woyke et al.   PLoS One

Carbohydrate Metabolism and Carbon Fixation in Roseobacter denitrificans OCh114

(2009) Kuo-Hsiang Tang et al.   PLoS One

Heme Uptake by Microscilla marina and Evidence for Heme Uptake Systems in the Genomes of Diverse Marine Bacteria

(2008) B. M. Hopkinson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes through oligonucleotide usage

(2008) Hamilton Ganesan et al.   BMC BIOINFORMATICS

SprB Is a Cell Surface Component of the Flavobacterium johnsoniae Gliding Motility Machinery

(2008) S. S. Nelson et al.   JOURNAL OF BACTERIOLOGY

Discovering Functional Novelty in Metagenomes: Examples from Light-Mediated Processes

(2008) A. H. Singh et al.   JOURNAL OF BACTERIOLOGY

Proteorhodopsins: an array of physiological roles?

(2008) Jed A. Fuhrman et al.   NATURE REVIEWS MICROBIOLOGY

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria)

(2008) J. M. Gonzalez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation

(2008) Sean R. Eddy   PLoS Computational Biology