Response of marine bacterioplankton pH homeostasis gene expression to elevated CO2

Phylogenomic Analysis and Predicted Physiological Role of the Proton-Translocating NADH:Quinone Oxidoreductase (Complex I) Across Bacteria

(2015) Melanie A. Spero et al.   mBio

Diatom acclimation to elevated CO2 via cAMP signalling and coordinated gene expression

(2015) Gwenn M. M. Hennon et al.   Nature Climate Change

Lessons learned from ocean acidification research

(2015) Ulf Riebesell et al.   Nature Climate Change

Phenotypic plasticity in heterotrophic marine microbial communities in continuous cultures

(2014) Sara Beier et al.   ISME Journal

Master recyclers: features and functions of bacteria associated with phytoplankton blooms

(2014) Alison Buchan et al.   NATURE REVIEWS MICROBIOLOGY

The Amazon continuum dataset: quantitative metagenomic and metatranscriptomic inventories of the Amazon River plume, June 2010

(2014) Brandon M Satinsky et al.   Microbiome

Regulation of proteorhodopsin gene expression by nutrient limitation in the marine bacteriumVibriosp. AND4

(2013) Neelam Akram et al.   ENVIRONMENTAL MICROBIOLOGY

Is Ocean Acidification an Open-Ocean Syndrome? Understanding Anthropogenic Impacts on Seawater pH

(2013) Carlos M. Duarte et al.   Estuaries and Coasts

Response of Acidithiobacillus caldus toward suboptimal pH conditions

(2013) Stefanie Mangold et al.   EXTREMOPHILES

Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill

(2013) Adam R Rivers et al.   ISME Journal

An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis

(2013) Cristian Del Fabbro et al.   PLoS One

Adaptive evolution of a key phytoplankton species to ocean acidification

(2012) Kai T. Lohbeck et al.   Nature Geoscience

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Small Changes in pH Have Direct Effects on Marine Bacterial Community Composition: A Microcosm Approach

(2012) Evamaria Krause et al.   PLoS One

Comparative metatranscriptomics identifies molecular bases for the physiological responses of phytoplankton to varying iron availability

(2012) A. Marchetti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

(2012) H. Teeling et al.   SCIENCE

Consequences of increased temperature and acidification on bacterioplankton community composition during a mesocosm spring bloom in the Baltic Sea

(2012) Markus V. Lindh et al.   Environmental Microbiology Reports

Ray Meta: scalable de novo metagenome assembly and profiling

(2012) Sébastien Boisvert et al.   GENOME BIOLOGY

Dynamics of extracellular enzyme activities in seawater under changed atmospheric pCO2: a mesocosm investigation

(2011) C Arnosti et al.   AQUATIC MICROBIAL ECOLOGY

The response of marine carbon and nutrient cycles to ocean acidification: Large uncertainties related to phytoplankton physiological assumptions

(2011) Alessandro Tagliabue et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Misannotations of rRNA can now generate 90% false positive protein matches in metatranscriptomic studies

(2011) H. James Tripp et al.   NUCLEIC ACIDS RESEARCH

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Coherent patterns in bacterial growth, growth efficiency, and leucine metabolism along a northeastern Pacific inshore-offshore transect

(2010) Paul A. del Giorgio et al.   LIMNOLOGY AND OCEANOGRAPHY

FragGeneScan: predicting genes in short and error-prone reads

(2010) Mina Rho et al.   NUCLEIC ACIDS RESEARCH

Paleo-perspectives on ocean acidification

(2010) Carles Pelejero et al.   TRENDS IN ECOLOGY & EVOLUTION

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre

(2009) Rachel S. Poretsky et al.   ENVIRONMENTAL MICROBIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH