Combined Use of Genome-Wide Association Data and Correlation Networks Unravels Key Regulators of Primary Metabolism in Arabidopsis thaliana

Understanding the control of acyl flux through the lipid metabolic network of plant oil biosynthesis

(2016) Philip D. Bates   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

Genome-Wide Association Mapping and Genomic Prediction Elucidate the Genetic Architecture of Morphological Traits in Arabidopsis

(2016) Rik Kooke et al.   PLANT PHYSIOLOGY

Characterization of spermidine synthase and spermine synthase – The polyamine-synthetic enzymes that induce early flowering in Gentiana triflora

(2015) Tomohiro Imamura et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Identification and Mode of Inheritance of Quantitative Trait Loci for Secondary Metabolite Abundance in Tomato

(2015) Saleh Alseekh et al.   PLANT CELL

Genetic Determinants of the Network of Primary Metabolism and Their Relationships to Plant Performance in a Maize Recombinant Inbred Line Population

(2015) Weiwei Wen et al.   PLANT CELL

Combining Quantitative Genetics Approaches with Regulatory Network Analysis to Dissect the Complex Metabolism of the Maize Kernel

(2015) Weiwei Wen et al.   PLANT PHYSIOLOGY

Discovery of a novel amino acid racemase through exploration of natural variation inArabidopsis thaliana

(2015) Renee C. Strauch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Machine Learning-Based Differential Network Analysis: A Study of Stress-Responsive Transcriptomes in Arabidopsis

(2014) C. Ma et al.   PLANT CELL

Combined correlation-based network and mQTL analyses efficiently identified loci for branched-chain amino acid, serine to threonine, and proline metabolism in tomato seeds

(2014) David Toubiana et al.   PLANT JOURNAL

Comparison of Methods to Account for Relatedness in Genome-Wide Association Studies with Family-Based Data

(2014) Jakris Eu-ahsunthornwattana et al.   PLoS Genetics

A global approach to analysis and interpretation of metabolic data for plant natural product discovery

(2013) Manhoi Hur et al.   NATURAL PRODUCT REPORTS

Genome-Wide Analysis of Branched-Chain Amino Acid Levels in Arabidopsis Seeds

(2013) R. Angelovici et al.   PLANT CELL

Disruption of Fumarylacetoacetate Hydrolase Causes Spontaneous Cell Death under Short-Day Conditions in Arabidopsis

(2013) C. Han et al.   PLANT PHYSIOLOGY

GAPIT: genome association and prediction integrated tool

(2012) Alexander E. Lipka et al.   BIOINFORMATICS

Comparison of co-expression measures: mutual information, correlation, and model based indices

(2012) Lin Song et al.   BMC BIOINFORMATICS

QTL detection power of multi-parental RIL populations in Arabidopsis thaliana

(2012) J R Klasen et al.   HEREDITY

Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel

(2012) Matthew W Horton et al.   NATURE GENETICS

A tyrosine aminotransferase involved in tocopherol synthesis in Arabidopsis

(2012) David Riewe et al.   PLANT JOURNAL

Metabolic Profiling of a Mapping Population Exposes New Insights in the Regulation of Seed Metabolism and Seed, Fruit, and Plant Relations

(2012) David Toubiana et al.   PLoS Genetics

Detection and interpretation of metabolite–transcript coresponses using combined profiling data

(2011) Henning Redestig et al.   BIOINFORMATICS

Human metabolic individuality in biomedical and pharmaceutical research

(2011) Karsten Suhre et al.   NATURE

High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions

(2011) Camila Caldana et al.   PLANT JOURNAL

Perturbation of spermine synthase Gene Expression and Transcript Profiling Provide New Insights on the Role of the Tetraamine Spermine in Arabidopsis Defense against Pseudomonas viridiflava

(2011) M. E. Gonzalez et al.   PLANT PHYSIOLOGY

Combining Genome-Wide Association Mapping and Transcriptional Networks to Identify Novel Genes Controlling Glucosinolates in Arabidopsis thaliana

(2011) Eva K. F. Chan et al.   PLOS BIOLOGY

The Use of Natural Genetic Diversity in the Understanding of Metabolic Organization and Regulation

(2011) Alisdair R. Fernie et al.   Frontiers in Plant Science

Genome-wide association studies in plants: the missing heritability is in the field

(2011) Benjamin Brachi et al.   GENOME BIOLOGY

Integrating Pathway Analysis and Genetics of Gene Expression for Genome-wide Association Studies

(2010) Hua Zhong et al.   AMERICAN JOURNAL OF HUMAN GENETICS

dmGWAS: dense module searching for genome-wide association studies in protein–protein interaction networks

(2010) Peilin Jia et al.   BIOINFORMATICS

Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana

(2010) Marco Todesco et al.   NATURE

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Mixed linear model approach adapted for genome-wide association studies

(2010) Zhiwu Zhang et al.   NATURE GENETICS

New approaches to population stratification in genome-wide association studies

(2010) Alkes L. Price et al.   NATURE REVIEWS GENETICS

Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana

(2010) Y. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Complex Genetic Architecture of the Metabolome

(2010) Eva K. F. Chan et al.   PLoS Genetics

Metabolomics for Functional Genomics, Systems Biology, and Biotechnology

(2009) Kazuki Saito et al.   Annual Review of Plant Biology

TargetSearch - a Bioconductor package for the efficient preprocessing of GC-MS metabolite profiling data

(2009) Álvaro Cuadros-Inostroza et al.   BMC BIOINFORMATICS

Gene expression and characterization of a stress-induced tyrosine decarboxylase fromArabidopsis thaliana

(2009) Thomas Lehmann et al.   FEBS LETTERS

Understanding the Evolution of Defense Metabolites in Arabidopsis thaliana Using Genome-wide Association Mapping

(2009) E. K. F. Chan et al.   GENETICS

Quantitative Genetic Bases of Anthocyanin Variation in Grape (Vitis vinifera L. ssp. sativa) Berry: A Quantitative Trait Locus to Quantitative Trait Nucleotide Integrated Study

(2009) A. Fournier-Level et al.   GENETICS

How does multiple testing correction work?

(2009) William S Noble   NATURE BIOTECHNOLOGY

Designing Genome-Wide Association Studies: Sample Size, Power, Imputation, and the Choice of Genotyping Chip

(2009) Chris C. A. Spencer et al.   PLoS Genetics

Comprehensive Flavonol Profiling and Transcriptome Coexpression Analysis Leading to Decoding Gene-Metabolite Correlations in Arabidopsis

(2008) K. Yonekura-Sakakibara et al.   PLANT CELL

Disruption of the Arabidopsis Circadian Clock Is Responsible for Extensive Variation in the Cold-Responsive Transcriptome

(2008) Z. Bieniawska et al.   PLANT PHYSIOLOGY

Decoding genes with coexpression networks and metabolomics – ‘majority report by precogs’

(2007) Kazuki Saito et al.   TRENDS IN PLANT SCIENCE