High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions

The role of TOR in autophagy regulation from yeast to plants and mammals

(2014) Sandra Díaz-Troya et al.   Autophagy

Sugar signals and molecular networks controlling plant growth

(2010) Sjef Smeekens et al.   CURRENT OPINION IN PLANT BIOLOGY

Identification of the 2-Hydroxyglutarate and Isovaleryl-CoA Dehydrogenases as Alternative Electron Donors Linking Lysine Catabolism to the Electron Transport Chain of Arabidopsis Mitochondria

(2010) W. L. Araujo et al.   PLANT CELL

Interaction with Diurnal and Circadian Regulation Results in Dynamic Metabolic and Transcriptional Changes during Cold Acclimation in Arabidopsis

(2010) Carmen Espinoza et al.   PLoS One

TargetSearch - a Bioconductor package for the efficient preprocessing of GC-MS metabolite profiling data

(2009) Álvaro Cuadros-Inostroza et al.   BMC BIOINFORMATICS

Coordinations between gene modules control the operation of plant amino acid metabolic networks

(2009) Hadar Less et al.   BMC Systems Biology

Metabolic reconfiguration precedes transcriptional regulation in the antioxidant response

(2009) Markus Ralser et al.   NATURE BIOTECHNOLOGY

AtMetExpress Development: A Phytochemical Atlas of Arabidopsis Development

(2009) F. Matsuda et al.   PLANT PHYSIOLOGY

Metabolic Pathways Involved in Cold Acclimation Identified by Integrated Analysis of Metabolites and Transcripts Regulated by DREB1A and DREB2A

(2009) K. Maruyama et al.   PLANT PHYSIOLOGY

Stability of Metabolic Correlations under Changing Environmental Conditions in Escherichia coli – A Systems Approach

(2009) Jedrzej Szymanski et al.   PLoS One

A Systems Approach Uncovers Restrictions for Signal Interactions Regulating Genome-wide Responses to Nutritional Cues in Arabidopsis

(2009) Gabriel Krouk et al.   PLoS Computational Biology

Coordinated Concentration Changes of Transcripts and Metabolites in Saccharomyces cerevisiae

(2009) Patrick H. Bradley et al.   PLoS Computational Biology

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis

(2008) Karen E Thum et al.   BMC Systems Biology

Metabolic Changes in Flatfish Hepatic Tumours Revealed by NMR-Based Metabolomics and Metabolic Correlation Networks

(2008) Andrew D. Southam et al.   JOURNAL OF PROTEOME RESEARCH

Global mRNA changes in microarray experiments

(2008) Matthew A Hannah et al.   NATURE BIOTECHNOLOGY

Multilevel genomic analysis of the response of transcripts, enzyme activities and metabolites in Arabidopsis rosettes to a progressive decrease of temperature in the non-freezing range

(2008) BJÖRN USADEL et al.   PLANT CELL AND ENVIRONMENT

Increasing amino acid supply in pea embryos reveals specific interactions of N and C metabolism, and highlights the importance of mitochondrial metabolism

(2008) Kathleen Weigelt et al.   PLANT JOURNAL

Disruption of the Arabidopsis Circadian Clock Is Responsible for Extensive Variation in the Cold-Responsive Transcriptome

(2008) Z. Bieniawska et al.   PLANT PHYSIOLOGY

Convergent energy and stress signaling

(2008) Elena Baena-González et al.   TRENDS IN PLANT SCIENCE

A Morning-Specific Phytohormone Gene Expression Program underlying Rhythmic Plant Growth

(2008) Todd P Michael et al.   PLOS BIOLOGY