Detection and interpretation of metabolite–transcript coresponses using combined profiling data

Classifying short gene expression time-courses with Bayesian estimation of piecewise constant functions

(2011) Christoph Hafemeister et al.   BIOINFORMATICS

Individual vs. combinatorial effect of elevated CO2 conditions and salinity stress on Arabidopsis thaliana liquid cultures: Comparing the early molecular response using time-series transcriptomic and metabolomic analyses

(2011) Harin Kanani et al.   BMC Systems Biology

AtPIN: Arabidopsis thaliana Protein Interaction Network

(2010) Marcelo M Brandão et al.   BMC BIOINFORMATICS

Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis

(2010) Henning Redestig et al.   BMC BIOINFORMATICS

Metabolic Pathway Relationships Revealed by an Integrative Analysis of the Transcriptional and Metabolic Temperature Stress-Response Dynamics in Yeast

(2010) Dirk Walther et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Dynamics of Time-Lagged Gene-to-Metabolite Networks of Escherichia coli Elucidated by Integrative Omics Approach

(2010) Hiroki Takahashi et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Constrained mixture estimation for analysis and robust classification of clinical time series

(2009) Ivan G. Costa et al.   BIOINFORMATICS

Timing of Gene Expression Responses to Environmental Changes

(2009) Gal Chechik et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Efficient Operation of NAD(P)H Dehydrogenase Requires Supercomplex Formation with Photosystem I via Minor LHCI in Arabidopsis

(2009) L. Peng et al.   PLANT CELL

Coordinated Concentration Changes of Transcripts and Metabolites in Saccharomyces cerevisiae

(2009) Patrick H. Bradley et al.   PLoS Computational Biology

Time-series integrated “omic” analyses to elucidate short-term stress-induced responses in plant liquid cultures

(2008) Bhaskar Dutta et al.   BIOTECHNOLOGY AND BIOENGINEERING

Decoding genes with coexpression networks and metabolomics – ‘majority report by precogs’

(2007) Kazuki Saito et al.   TRENDS IN PLANT SCIENCE