Sequencing improves our ability to study threatened migratory species: Genetic population assignment in California's Central Valley Chinook salmon

The utility of genetics in marine fisheries management: a simulation study based on Pacific cod off Alaska

(2015) Ingrid Spies et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Environmental adaptation in Chinook salmon (Oncorhynchus tshawytscha) throughout their North American range

(2015) Benjamin C. Hecht et al.   MOLECULAR ECOLOGY

An integrated linkage map reveals candidate genes underlying adaptive variation in Chinook salmon (Oncorhynchus tshawytscha)

(2015) G. J. McKinney et al.   Molecular Ecology Resources

Using Next-Generation Sequencing to Assist a Conservation Hatchery: a Single-Nucleotide Polymorphism Panel for the Genetic Management of Endangered Delta Smelt

(2015) Ryan M. Lew et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Single-nucleotide polymorphisms (SNPs) identified through genotyping-by-sequencing improve genetic stock identification of Chinook salmon (Oncorhynchus tshawytscha) from western Alaska

(2014) Wesley A. Larson et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Genetic characterization of California's Central Valley chinook salmon

(2014) Mariah H. Meek et al.   ECOLOGY

Evaluation of a single nucleotide polymorphism baseline for genetic stock identification of Chinook Salmon (Oncorhynchus tshawytscha) in the California Current large marine ecosystem

(2014) Anthony J. Clemento et al.   FISHERY BULLETIN

Mapping migration in a songbird using high-resolution genetic markers

(2014) Kristen C. Ruegg et al.   MOLECULAR ECOLOGY

Use of genotyping by sequencing data to develop a high-throughput and multifunctional SNP panel for conservation applications in Pacific lamprey

(2014) Jon E. Hess et al.   Molecular Ecology Resources

Quantifying the Uncertainty of a Juvenile Chinook Salmon Race Identification Method for a Mixed-Race Stock

(2014) Brett N. Harvey et al.   NORTH AMERICAN JOURNAL OF FISHERIES MANAGEMENT

A Dense Linkage Map for Chinook salmon ( Oncorhynchus tshawytscha ) Reveals Variable Chromosomal Divergence After an Ancestral Whole Genome Duplication Event

(2014) Marine S. O. Brieuc et al.   G3-Genes Genomes Genetics

Assignment of Chinook Salmon ( Oncorhynchus tshawytscha) Linkage Groups to Specific Chromosomes Reveals a Karyotype with Multiple Rearrangements of the Chromosome Arms of Rainbow Trout ( Oncorhynchus mykiss )

(2013) Ruth B. Phillips et al.   G3-Genes Genomes Genetics

RAD sequencing yields a high success rate for westslope cutthroat and rainbow trout species-diagnostic SNP assays

(2012) STEPHEN J. AMISH et al.   Molecular Ecology Resources

Weakened portfolio effect in a collapsed salmon population complex

(2011) Stephanie Marie Carlson et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Spatial and trophic overlap of marked and unmarked Columbia River Basin spring Chinook salmon during early marine residence with implications for competition between hatchery and naturally produced fish

(2011) Elizabeth A. Daly et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Water Management Adaptations to Prevent Loss of Spring-Run Chinook Salmon in California under Climate Change

(2011) Lisa C. Thompson et al.   JOURNAL OF WATER RESOURCES PLANNING AND MANAGEMENT

A conserved haplotype controls parallel adaptation in geographically distant salmonid populations

(2011) MICHAEL R. MILLER et al.   MOLECULAR ECOLOGY

Discovery and characterization of single nucleotide polymorphisms in Chinook salmon,Oncorhynchus tshawytscha

(2011) A. J. CLEMENTO et al.   Molecular Ecology Resources

An empirical comparison of SNPs and microsatellites for parentage and kinship assignment in a wild sockeye salmon (Oncorhynchus nerka) population

(2011) LORENZ HAUSER et al.   Molecular Ecology Resources

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems

(2011) André E Minoche et al.   GENOME BIOLOGY

Assessing the power of informative subsets of loci for population assignment: standard methods are upwardly biased

(2010) E. C. ANDERSON   Molecular Ecology Resources

Population diversity and the portfolio effect in an exploited species

(2010) Daniel E. Schindler et al.   NATURE

Distinguishing technology from biology: a critical review of the use of GPS telemetry data in ecology

(2010) M. Hebblewhite et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Climate warming, water storage, and Chinook salmon in California’s Sacramento Valley

(2008) David Yates et al.   CLIMATIC CHANGE

Characterization of a Chromosomal Rearrangement Responsible for Producing "Apparent" XY-Female Fall-Run Chinook Salmon in California

(2008) K. S. Williamson et al.   JOURNAL OF HEREDITY

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Going, Going, Gone: Is Animal Migration Disappearing

(2008) David S Wilcove et al.   PLOS BIOLOGY

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources