Single-nucleotide polymorphisms (SNPs) identified through genotyping-by-sequencing improve genetic stock identification of Chinook salmon (Oncorhynchus tshawytscha) from western Alaska

Detection and mapping of QTL for temperature tolerance and body size in Chinook salmon (Oncorhynchus tshawytscha) using genotyping by sequencing

(2014) Meredith V. Everett et al.   Evolutionary Applications

Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha)

(2014) Wesley A. Larson et al.   Evolutionary Applications

Exploiting genetic diversity to balance conservation and harvest of migratory salmon

(2013) Tyler H. Dann et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

THE GENETIC ARCHITECTURE OF REPRODUCTIVE ISOLATION DURING SPECIATION-WITH-GENE-FLOW IN LAKE WHITEFISH SPECIES PAIRS ASSESSED BY RAD SEQUENCING

(2013) Pierre-Alexandre Gagnaire et al.   EVOLUTION

Genotyping-by-sequencing in ecological and conservation genomics

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update

(2012) R. Peakall et al.   BIOINFORMATICS

Meiotic maps of sockeye salmon derived from massively parallel DNA sequencing

(2012) Meredith V Everett et al.   BMC GENOMICS

Single-nucleotide polymorphisms reveal distribution and migration of Chinook salmon (Oncorhynchus tshawytscha) in the Bering Sea and North Pacific Ocean

(2012) Wesley A. Larson et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Landscape heterogeneity and local adaptation define the spatial genetic structure of Pacific salmon in a pristine environment

(2012) Michael W. Ackerman et al.   CONSERVATION GENETICS

Genome-wide association reveals genetic basis for the propensity to migrate in wild populations of rainbow and steelhead trout

(2012) Benjamin C. Hecht et al.   MOLECULAR ECOLOGY

RAD sequencing yields a high success rate for westslope cutthroat and rainbow trout species-diagnostic SNP assays

(2012) STEPHEN J. AMISH et al.   Molecular Ecology Resources

Rank and Order: Evaluating the Performance of SNPs for Individual Assignment in a Non-Model Organism

(2012) Caroline G. Storer et al.   PLoS One

Gene-associated markers provide tools for tackling illegal fishing and false eco-certification

(2012) Einar E. Nielsen et al.   Nature Communications

Microsatellite Mixed-Stock Identification of Coho Salmon in British Columbia

(2012) Terry D. Beacham et al.   Marine and Coastal Fisheries

Detection of outlier loci and their utility for fisheries management

(2011) Michael A. Russello et al.   Evolutionary Applications

A conserved haplotype controls parallel adaptation in geographically distant salmonid populations

(2011) MICHAEL R. MILLER et al.   MOLECULAR ECOLOGY

Genetic differentiation of Alaska Chinook salmon: the missing link for migratory studies

(2011) WILLIAM D. TEMPLIN et al.   Molecular Ecology Resources

Discovery and characterization of single nucleotide polymorphisms in Chinook salmon,Oncorhynchus tshawytscha

(2011) A. J. CLEMENTO et al.   Molecular Ecology Resources

Single nucleotide polymorphisms across a species’ range: implications for conservation studies of Pacific salmon

(2011) L. W. SEEB et al.   Molecular Ecology Resources

Evaluating SNP ascertainment bias and its impact on population assignment in Atlantic cod,Gadus morhua

(2011) IAN R. BRADBURY et al.   Molecular Ecology Resources

Multiplex preamplification PCR and microsatellite validation enables accurate single nucleotide polymorphism genotyping of historical fish scales

(2011) MATT J. SMITH et al.   Molecular Ecology Resources

Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genome

(2011) M. V. EVERETT et al.   Molecular Ecology Resources

Single-nucleotide polymorphism (SNP) discovery and applications of SNP genotyping in nonmodel organisms

(2011) J. E. SEEB et al.   Molecular Ecology Resources

Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout

(2011) PAUL A. HOHENLOHE et al.   Molecular Ecology Resources

Genotype and SNP calling from next-generation sequencing data

(2011) Rasmus Nielsen et al.   NATURE REVIEWS GENETICS

Local De Novo Assembly of RAD Paired-End Contigs Using Short Sequencing Reads

(2011) Paul D. Etter et al.   PLoS One

Single-Nucleotide Polymorphisms (SNPs) under Diversifying Selection Provide Increased Accuracy and Precision in Mixed-Stock Analyses of Sockeye Salmon from the Copper River, Alaska

(2011) Michael W. Ackerman et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Life History and Seasonal Stock-Specific Ocean Migration of Juvenile Chinook Salmon

(2011) S. Tucker et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems

(2011) André E Minoche et al.   GENOME BIOLOGY

Genotype calling and mapping of multisite variants using an Atlantic salmon iSelect SNP array

(2010) Lars Gidskehaug et al.   BIOINFORMATICS

Comparative landscape genetic analysis of three Pacific salmon species from subarctic North America

(2010) Jeffrey B. Olsen et al.   CONSERVATION GENETICS

Transcriptome sequencing and high-resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonids

(2010) J. E. SEEB et al.   Molecular Ecology Resources

Assessing the power of informative subsets of loci for population assignment: standard methods are upwardly biased

(2010) E. C. ANDERSON   Molecular Ecology Resources

Population diversity and the portfolio effect in an exploited species

(2010) Daniel E. Schindler et al.   NATURE

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Summer–Fall Distribution of Stocks of Immature Sockeye Salmon in the Bering Sea as Revealed by Single-Nucleotide Polymorphisms

(2010) C. Habicht et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Characterization of 22 novel single nucleotide polymorphism markers in steelhead and rainbow trout

(2009) NATHAN R. CAMPBELL et al.   Molecular Ecology Resources

Seasonal Stock-Specific Migrations of Juvenile Sockeye Salmon along the West Coast of North America: Implications for Growth

(2009) S. Tucker et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

An improved method for predicting the accuracy of genetic stock identification

(2008) Eric C. Anderson et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Advances in molecular technology and their impact on fisheries genetics

(2008) Lorenz Hauser et al.   FISH AND FISHERIES

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

The Application of Rapid Microsatellite-Based Stock Identification to Management of a Chinook Salmon Troll Fishery off the Queen Charlotte Islands, British Columbia

(2008) Terry D. Beacham et al.   NORTH AMERICAN JOURNAL OF FISHERIES MANAGEMENT

The Application of Microsatellites for Stock Identification of Yukon River Chinook Salmon

(2008) T. D. Beacham et al.   NORTH AMERICAN JOURNAL OF FISHERIES MANAGEMENT

Identification of Novel Single-Nucleotide Polymorphisms in Chinook Salmon and Variation among Life History Types

(2008) Nathan R. Campbell et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources