RAD sequencing yields a high success rate for westslope cutthroat and rainbow trout species-diagnostic SNP assays

Exome-wide DNA capture and next generation sequencing in domestic and wild species

(2011) Ted Cosart et al.   BMC GENOMICS

A conserved haplotype controls parallel adaptation in geographically distant salmonid populations

(2011) MICHAEL R. MILLER et al.   MOLECULAR ECOLOGY

Single-nucleotide polymorphism (SNP) discovery and applications of SNP genotyping in nonmodel organisms

(2011) J. E. SEEB et al.   Molecular Ecology Resources

Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout

(2011) PAUL A. HOHENLOHE et al.   Molecular Ecology Resources

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Local De Novo Assembly of RAD Paired-End Contigs Using Short Sequencing Reads

(2011) Paul D. Etter et al.   PLoS One

Using DNA to Reveal a Mosquito's History

(2011) E. Pennisi   SCIENCE

Ecological consequences of hybridization between native westslope cutthroat (Oncorhynchus clarkii lewisi) and introduced rainbow (Oncorhynchus mykiss) trout: effects on life history and habitat use

(2010) Joseph B. Rasmussen et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

A suite of twelve single nucleotide polymorphism markers for detecting introgression between cutthroat and rainbow trout

(2010) ANDREW S. HARWOOD et al.   Molecular Ecology Resources

Diagnostic single nucleotide polymorphisms for identifying westslope cutthroat trout (Oncorhynchus clarki lewisi), Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri) and rainbow trout (Oncorhynchus mykiss)

(2010) S. T. KALINOWSKI et al.   Molecular Ecology Resources

High-Resolution Melting Analysis for the Discovery of Novel Single-Nucleotide Polymorphisms in Rainbow and Cutthroat Trout for Species Identification

(2010) Molly T. McGlauflin et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Hybridization rapidly reduces fitness of a native trout in the wild

(2009) C. C. Muhlfeld et al.   Biology Letters

Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library

(2009) Cecilia Sánchez et al.   BMC GENOMICS

Six diagnostic single nucleotide polymorphism markers for detecting introgression between cutthroat and rainbow trouts

(2009) AMANDA J. FINGER et al.   Molecular Ecology Resources

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One