标题
Onco-proteogenomics: cancer proteomics joins forces with genomics
作者
关键词
-
出版物
NATURE METHODS
Volume 11, Issue 11, Pages 1107-1113
出版商
Springer Nature
发表日期
2014-10-31
DOI
10.1038/nmeth.3138
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Proteogenomic characterization of human colon and rectal cancer
- (2014) Bing Zhang et al. NATURE
- Global optimization of somatic variant identification in cancer genomes with a global community challenge
- (2014) Paul C Boutros et al. NATURE GENETICS
- Proteogenomics: concepts, applications and computational strategies
- (2014) Alexey I Nesvizhskii NATURE METHODS
- customProDB: an R package to generate customized protein databases from RNA-Seq data for proteomics search
- (2013) Xiaojing Wang et al. BIOINFORMATICS
- Identification of gene fusions from human lung cancer mass spectrometry data
- (2013) Han Sun et al. BMC GENOMICS
- Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions
- (2013) Jainab Khatun et al. BMC GENOMICS
- Proteogenomic Analysis Reveals Unanticipated Adaptations of Colorectal Tumor Cells to Deficiencies in DNA Mismatch Repair
- (2013) P. J. Halvey et al. CANCER RESEARCH
- Exploring the Proteomic Landscape of a Gastric Cancer Biopsy with the Shotgun Imaging Analyzer
- (2013) Priscila Ferreira Aquino et al. JOURNAL OF PROTEOME RESEARCH
- Proteogenomic Database Construction Driven from Large Scale RNA-seq Data
- (2013) Sunghee Woo et al. JOURNAL OF PROTEOME RESEARCH
- Peppy: Proteogenomic Search Software
- (2013) Brian A. Risk et al. JOURNAL OF PROTEOME RESEARCH
- Discovery and Mass Spectrometric Analysis of Novel Splice-junction Peptides Using RNA-Seq
- (2013) Gloria M. Sheynkman et al. MOLECULAR & CELLULAR PROTEOMICS
- The Coming Age of Complete, Accurate, and Ubiquitous Proteomes
- (2013) Matthias Mann et al. MOLECULAR CELL
- Mutational heterogeneity in cancer and the search for new cancer-associated genes
- (2013) Michael S. Lawrence et al. NATURE
- Variation and genetic control of protein abundance in humans
- (2013) Linfeng Wu et al. NATURE
- Mutational landscape and significance across 12 major cancer types
- (2013) Cyriac Kandoth et al. NATURE
- The Cancer Genome Atlas Pan-Cancer analysis project
- (2013) John N Weinstein et al. NATURE GENETICS
- HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics
- (2013) Rui M M Branca et al. NATURE METHODS
- Computational approaches to identify functional genetic variants in cancer genomes
- (2013) NATURE METHODS
- Proteoform: a single term describing protein complexity
- (2013) Lloyd M Smith et al. NATURE METHODS
- Identification of genetic variants influencing the human plasma proteome
- (2013) A. Johansson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies
- (2013) Pratik Jagtap et al. PROTEOMICS
- Primate Transcript and Protein Expression Levels Evolve Under Compensatory Selection Pressures
- (2013) Z. Khan et al. SCIENCE
- Missing the target: matrix metalloproteinase antitargets in inflammation and cancer
- (2013) Antoine Dufour et al. TRENDS IN PHARMACOLOGICAL SCIENCES
- Global Proteome Analysis of the NCI-60 Cell Line Panel
- (2013) Amin Moghaddas Gholami et al. Cell Reports
- Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing
- (2013) Jason O'Rawe et al. Genome Medicine
- Composition of the mitochondrial electron transport chain in Acanthamoeba castellanii: Structural and evolutionary insights
- (2012) Ryan M.R. Gawryluk et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- Mutant p53: one name, many proteins
- (2012) W. A. Freed-Pastor et al. GENES & DEVELOPMENT
- GeLC-MRM Quantitation of Mutant KRAS Oncoprotein in Complex Biological Samples
- (2012) Patrick J. Halvey et al. JOURNAL OF PROTEOME RESEARCH
- The Biology/Disease-driven Human Proteome Project (B/D-HPP): Enabling Protein Research for the Life Sciences Community
- (2012) Ruedi Aebersold et al. JOURNAL OF PROTEOME RESEARCH
- Extensive quantitative remodeling of the proteome between normal colon tissue and adenocarcinoma
- (2012) Jacek R Wiśniewski et al. Molecular Systems Biology
- De novo derivation of proteomes from transcriptomes for transcript and protein identification
- (2012) Vanessa C Evans et al. NATURE METHODS
- The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments
- (2012) Nicholas T Ingolia et al. Nature Protocols
- ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data
- (2012) Milana Frenkel-Morgenstern et al. NUCLEIC ACIDS RESEARCH
- Comment on "Widespread RNA and DNA Sequence Differences in the Human Transcriptome"
- (2012) J. K. Pickrell et al. SCIENCE
- Comment on "Widespread RNA and DNA Sequence Differences in the Human Transcriptome"
- (2012) C. L. Kleinman et al. SCIENCE
- Proteomic Profiling Identifies Dysregulated Pathways in Small Cell Lung Cancer and Novel Therapeutic Targets Including PARP1
- (2012) Lauren Averett Byers et al. Cancer Discovery
- Hallmarks of Cancer: The Next Generation
- (2011) Douglas Hanahan et al. CELL
- Algorithms for thede novosequencing of peptides from tandem mass spectra
- (2011) Jens Allmer Expert Review of Proteomics
- The discovery of novel protein-coding features in mouse genome based on mass spectrometry data
- (2011) Xiao-Bin Xing et al. GENOMICS
- Protein Identification Using Customized Protein Sequence Databases Derived from RNA-Seq Data
- (2011) Xiaojing Wang et al. JOURNAL OF PROTEOME RESEARCH
- A Quantitative Spatial Proteomics Analysis of Proteome Turnover in Human Cells
- (2011) François-Michel Boisvert et al. MOLECULAR & CELLULAR PROTEOMICS
- Quantification of mRNA and protein and integration with protein turnover in a bacterium
- (2011) T. Maier et al. Molecular Systems Biology
- Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma
- (2011) Ryan D. Morin et al. NATURE
- MHC class II transactivator CIITA is a recurrent gene fusion partner in lymphoid cancers
- (2011) Christian Steidl et al. NATURE
- neXtProt: a knowledge platform for human proteins
- (2011) L. Lane et al. NUCLEIC ACIDS RESEARCH
- Widespread RNA and DNA Sequence Differences in the Human Transcriptome
- (2011) M. Li et al. SCIENCE
- An EMT–Driven Alternative Splicing Program Occurs in Human Breast Cancer and Modulates Cellular Phenotype
- (2011) Irina M. Shapiro et al. PLoS Genetics
- Proteomic Characterization of Novel Alternative Splice Variant Proteins in Human Epidermal Growth Factor Receptor 2/neu–Induced Breast Cancers
- (2010) Rajasree Menon et al. CANCER RESEARCH
- Targeted proteomics by selected reaction monitoring mass spectrometry: applications to systems biology and biomarker discovery
- (2010) Sarah Elschenbroich et al. Molecular BioSystems
- COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer
- (2010) S. A. Forbes et al. NUCLEIC ACIDS RESEARCH
- Tumor Transcriptome Sequencing Reveals Allelic Expression Imbalances Associated with Copy Number Alterations
- (2010) Brian B. Tuch et al. PLoS One
- Onco-proteogenomics: a novel approach to identify cancer-specific mutations combining proteomics and transcriptome deep sequencing
- (2010) Mohamed Helmy et al. GENOME BIOLOGY
- Metabolism, Cell Surface Organization, and Disease
- (2009) James W. Dennis et al. CELL
- ChimerDB 2.0—a knowledgebase for fusion genes updated
- (2009) Pora Kim et al. NUCLEIC ACIDS RESEARCH
- A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data
- (2008) Fan Mo et al. BMC BIOINFORMATICS
- Identification of Novel Alternative Splice Isoforms of Circulating Proteins in a Mouse Model of Human Pancreatic Cancer
- (2008) R. Menon et al. CANCER RESEARCH
- Mapping short DNA sequencing reads and calling variants using mapping quality scores
- (2008) H. Li et al. GENOME RESEARCH
- McKusick's Online Mendelian Inheritance in Man (OMIM(R))
- (2008) J. Amberger et al. NUCLEIC ACIDS RESEARCH
- Discovery and revision of Arabidopsis genes by proteogenomics
- (2008) N. E. Castellana et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started