The Human Leukocyte Antigen–presented Ligandome of B Lymphocytes

MHC I-associated peptides preferentially derive from transcripts bearing miRNA response elements

(2012) D. P. Granados et al.   BLOOD

Constitutive and Inflammatory Immunopeptidome of Pancreatic  -Cells

(2012) N. L. Dudek et al.   DIABETES

The Energetic Basis Underpinning T-cell Receptor Recognition of a Super-bulged Peptide Bound to a Major Histocompatibility Complex Class I Molecule

(2012) Yu Chih Liu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Major Histocompatibility Complex Class II+Invariant Chain Negative Breast Cancer Cells Present Unique Peptides that Activate Tumor-specific T Cells from Breast Cancer Patients

(2012) Olesya Chornoguz et al.   MOLECULAR & CELLULAR PROTEOMICS

Secreted HLA recapitulates the immunopeptidome and allows in-depth coverage of HLA A*02:01 ligands

(2012) Katherine E. Scull et al.   MOLECULAR IMMUNOLOGY

Insights into MHC class I antigen processing gained from large-scale analysis of class I ligands

(2011) Gabor Mester et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Mismatches outside exons 2 and 3 do not alter the peptide motif of the allele group B*44:02P

(2011) Christina Bade-Doeding et al.   HUMAN IMMUNOLOGY

Systems-wide Proteomic Analysis in Mammalian Cells Reveals Conserved, Functional Protein Turnover

(2011) Sidney B. Cambridge et al.   JOURNAL OF PROTEOME RESEARCH

HLA-DR-presented Peptide Repertoires Derived From Human Monocyte-derived Dendritic Cells Pulsed With Blood Coagulation Factor VIII

(2011) Simon D. van Haren et al.   MOLECULAR & CELLULAR PROTEOMICS

The Human Immunopeptidome Project, a Suggestion for yet another Postgenome Next Big Thing

(2011) Arie Admon et al.   MOLECULAR & CELLULAR PROTEOMICS

PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse

(2011) P. V. Hornbeck et al.   NUCLEIC ACIDS RESEARCH

High-Throughput Identification of Potential Minor Histocompatibility Antigens by MHC Tetramer-Based Screening: Feasibility and Limitations

(2011) Pleun Hombrink et al.   PLoS One

Direct quantitation of MHC-bound peptide epitopes by selected reaction monitoring

(2011) Chor Teck Tan et al.   PROTEOMICS

DRiPs solidify: progress in understanding endogenous MHC class I antigen processing

(2011) Jonathan W. Yewdell   TRENDS IN IMMUNOLOGY

MHC-based detection of antigen-specific CD8+ T cell responses

(2010) Sine Reker Hadrup et al.   CANCER IMMUNOLOGY IMMUNOTHERAPY

HSPVdb—the Human Short Peptide Variation Database for improved mass spectrometry-based detection of polymorphic HLA-ligands

(2010) Harm Nijveen et al.   IMMUNOGENETICS

Viral adaptation to immune selection pressure by HLA class I–restricted CTL responses targeting epitopes in HIV frameshift sequences

(2010) Christoph T. Berger et al.   JOURNAL OF EXPERIMENTAL MEDICINE

CD8 T cell response and evolutionary pressure to HIV-1 cryptic epitopes derived from antisense transcription

(2010) Anju Bansal et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Antigen processing by nardilysin and thimet oligopeptidase generates cytotoxic T cell epitopes

(2010) Jan H Kessler et al.   NATURE IMMUNOLOGY

Phospho.ELM: a database of phosphorylation sites--update 2011

(2010) H. Dinkel et al.   NUCLEIC ACIDS RESEARCH

Identification of Natural MHC Class II Presented Phosphopeptides and Tumor-Derived MHC Class I Phospholigands

(2009) Verena S. Meyer et al.   JOURNAL OF PROTEOME RESEARCH

Parallel detection of antigen-specific T-cell responses by multidimensional encoding of MHC multimers

(2009) Sine Reker Hadrup et al.   NATURE METHODS

Improved visualization of protein consensus sequences by iceLogo

(2009) Niklaas Colaert et al.   NATURE METHODS

Vaccination against HPV-16 Oncoproteins for Vulvar Intraepithelial Neoplasia

(2009) Gemma G. Kenter et al.   NEW ENGLAND JOURNAL OF MEDICINE

The Immune Epitope Database 2.0

(2009) Randi Vita et al.   NUCLEIC ACIDS RESEARCH

Immunomonitoring of graft-versus-host minor histocompatibility antigen correlates with graft-versus-host disease and absence of relapse after graft

(2009) David Laurin et al.   TRANSFUSION

Essential differences in ligand presentation and T cell epitope recognition among HLA molecules of the HLA-B44 supertype

(2008) Nina Hillen et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Peptide separation with immobilized pI strips is an attractive alternative to in-gel protein digestion for proteome analysis

(2008) Nina C. Hubner et al.   PROTEOMICS

Highly Robust, Automated, and Sensitive Online TiO2-Based Phosphoproteomics Applied To Study Endogenous Phosphorylation inDrosophila melanogaster

(2007) Martijn W. H. Pinkse et al.   JOURNAL OF PROTEOME RESEARCH