Editor’s Highlight: Dose–Response Analysis of RNA-Seq Profiles in Archival Formalin-Fixed Paraffin-Embedded Samples
出版年份 2016 全文链接
标题
Editor’s Highlight: Dose–Response Analysis of RNA-Seq Profiles in Archival Formalin-Fixed Paraffin-Embedded Samples
作者
关键词
-
出版物
TOXICOLOGICAL SCIENCES
Volume 154, Issue 2, Pages 202-213
出版商
Oxford University Press (OUP)
发表日期
2016-08-26
DOI
10.1093/toxsci/kfw161
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Library construction for next-generation sequencing: Overviews and challenges
- (2016) Steven R. Head et al. BIOTECHNIQUES
- Accuracy of Molecular Data Generated with FFPE Biospecimens: Lessons from the Literature
- (2015) S. R. Greytak et al. CANCER RESEARCH
- Organocatalytic removal of formaldehyde adducts from RNA and DNA bases
- (2015) Saswata Karmakar et al. Nature Chemistry
- Dose and Effect Thresholds for Early Key Events in a PPARα-Mediated Mode of Action
- (2015) April D. Lake et al. TOXICOLOGICAL SCIENCES
- Mining the Archives: A Cross-Platform Analysis of Gene Expression Profiles in Archival Formalin-Fixed Paraffin-Embedded Tissues
- (2015) A. Francina Webster et al. TOXICOLOGICAL SCIENCES
- A Review of Preanalytical Factors Affecting Molecular, Protein, and Morphological Analysis of Formalin-Fixed, Paraffin-Embedded (FFPE) Tissue: How Well Do You Know Your FFPE Specimen?
- (2014) B. Paige Bass et al. ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE
- RNA-seq: impact of RNA degradation on transcript quantification
- (2014) Irene Gallego Romero et al. BMC BIOLOGY
- Comparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling
- (2014) Wei Zhao et al. BMC GENOMICS
- The use of mode of action information in risk assessment: Quantitative key events/dose-response framework for modeling the dose-response for key events
- (2014) Ted W. Simon et al. CRITICAL REVIEWS IN TOXICOLOGY
- RNA-Seq-based toxicogenomic assessment of fresh frozen and formalin-fixed tissues yields similar mechanistic insights
- (2014) Scott S. Auerbach et al. JOURNAL OF APPLIED TOXICOLOGY
- Comparative Analysis of the Relationship Between Trichloroethylene Metabolism and Tissue-Specific Toxicity Among Inbred Mouse Strains: Liver Effects
- (2014) Hong Sik Yoo et al. JOURNAL OF TOXICOLOGY AND ENVIRONMENTAL HEALTH-PART A-CURRENT ISSUES
- Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study
- (2014) Sheng Li et al. NATURE BIOTECHNOLOGY
- The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance
- (2014) Charles Wang et al. NATURE BIOTECHNOLOGY
- Detecting and correcting systematic variation in large-scale RNA sequencing data
- (2014) Sheng Li et al. NATURE BIOTECHNOLOGY
- A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
- (2014) NATURE BIOTECHNOLOGY
- Next-Generation Sequencing of RNA and DNA Isolated from Paired Fresh-Frozen and Formalin-Fixed Paraffin-Embedded Samples of Human Cancer and Normal Tissue
- (2014) Jakob Hedegaard et al. PLoS One
- Comparative Time Course Profiles of Phthalate Stereoisomers in Mice
- (2014) Charles E. Wood et al. TOXICOLOGICAL SCIENCES
- Dose-Response Modeling of Early Molecular and Cellular Key Events in the CAR-Mediated Hepatocarcinogenesis Pathway
- (2014) David R. Geter et al. TOXICOLOGICAL SCIENCES
- Mode of action framework analysis for receptor-mediated toxicity: The peroxisome proliferator-activated receptor alpha (PPARα) as a case study
- (2013) J. Christopher Corton et al. CRITICAL REVIEWS IN TOXICOLOGY
- New developments in the evolution and application of the WHO/IPCS framework on mode of action/species concordance analysis
- (2013) M. E. Meek et al. JOURNAL OF APPLIED TOXICOLOGY
- Comparative analysis of RNA sequencing methods for degraded or low-input samples
- (2013) Xian Adiconis et al. NATURE METHODS
- Quality Control of RNA Preservation and Extraction from Paraffin-Embedded Tissue: Implications for RT-PCR and Microarray Analysis
- (2013) Karl Kashofer et al. PLoS One
- Temporal Concordance Between Apical and Transcriptional Points of Departure for Chemical Risk Assessment
- (2013) Russell S. Thomas et al. TOXICOLOGICAL SCIENCES
- Concordance of Transcriptional and Apical Benchmark Dose Levels for Conazole-Induced Liver Effects in Mice
- (2013) Virunya S. Bhat et al. TOXICOLOGICAL SCIENCES
- Report on emerging technologies for translational bioinformatics: a symposium on gene expression profiling for archival tissues
- (2012) Levi Waldron et al. BMC CANCER
- Nucleic acids from long-term preserved FFPE tissues are suitable for downstream analyses
- (2012) Natalie Ludyga et al. VIRCHOWS ARCHIV
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Nucleic acid quantity and quality from paraffin blocks: Defining optimal fixation, processing and DNA/RNA extraction techniques
- (2011) Gulisa Turashvili et al. EXPERIMENTAL AND MOLECULAR PATHOLOGY
- Paraffin Embedding Contributes to RNA Aggregation, Reduced RNA Yield, and Low RNA Quality
- (2011) David L. Evers et al. JOURNAL OF MOLECULAR DIAGNOSTICS
- The Effect of Formaldehyde Fixation on RNA
- (2011) David L. Evers et al. JOURNAL OF MOLECULAR DIAGNOSTICS
- Gene Expression Profiles from Formalin Fixed Paraffin Embedded Breast Cancer Tissue Are Largely Comparable to Fresh Frozen Matched Tissue
- (2011) Lorenza Mittempergher et al. PLoS One
- RNA-Seq gene expression estimation with read mapping uncertainty
- (2009) Bo Li et al. BIOINFORMATICS
- Mapping and quantifying mammalian transcriptomes by RNA-Seq
- (2008) Ali Mortazavi et al. NATURE METHODS
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started