Selective Preference of Parallel DNA Triplexes Is Due to the Disruption of Hoogsteen Hydrogen Bonds Caused by the Severe Nonisostericity between the G*GC and T*AT Triplets

Triplex DNA logic gate based upon switching on/off their structure by Ag+/cysteine

(2015) Zhiyou Xiao et al.   ANALYST

Stable DNA Nanomachine Based on Duplex–Triplex Transition for Ratiometric Imaging Instantaneous pH Changes in Living Cells

(2015) Mengqi Yang et al.   ANALYTICAL CHEMISTRY

A Distinct Triplex DNA Unwinding Activity of ChlR1 Helicase

(2015) Manhong Guo et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Extended molecular dynamics of ac-kitpromoter quadruplex

(2015) Barira Islam et al.   NUCLEIC ACIDS RESEARCH

MEG3 long noncoding RNA regulates the TGF-β pathway genes through formation of RNA–DNA triplex structures

(2015) Tanmoy Mondal et al.   Nature Communications

PARTICLE, a Triplex-Forming Long ncRNA, Regulates Locus-Specific Methylation in Response to Low-Dose Irradiation

(2015) Valerie Bríd O’Leary et al.   Cell Reports

Twisting Right to Left: A…A Mismatch in a CAG Trinucleotide Repeat Overexpansion Provokes Left-Handed Z-DNA Conformation

(2015) Noorain Khan et al.   PLoS Computational Biology

Detection of Pseudomonas aeruginosa by a triplex polymerase chain reaction assay based on lasI/R and gyrB genes

(2015) Hosseine Aghamollaei et al.   Journal of Infection and Public Health

Increasing the minicircle DNA purity using an enhanced triplex DNA technology to eliminate DNA contaminants

(2015) Xiaohu H Hou et al.   Molecular Therapy-Methods & Clinical Development

Detection of cancer cells using triplex DNA molecular beacons based on expression of enhanced green fluorescent protein (eGFP)

(2014) Dongmei Xi et al.   CHEMICAL COMMUNICATIONS

Monitoring DNA triplex formation using multicolor fluorescence and application to insulin-like growth factor I promoter downregulation

(2014) Nadia Hégarat et al.   FEBS Journal

Mechanical Model of DNA Allostery

(2014) Tomáš Dršata et al.   Journal of Physical Chemistry Letters

Programmable pH-Triggered DNA Nanoswitches

(2014) Andrea Idili et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The TTSMI database: a catalog of triplex target DNA sites associated with genes and regulatory elements in the human genome

(2014) Piroon Jenjaroenpun et al.   NUCLEIC ACIDS RESEARCH

Free-Energy Landscape of Reverse tRNA Translocation through the Ribosome Analyzed by Electron Microscopy Density Maps and Molecular Dynamics Simulations

(2014) Hisashi Ishida et al.   PLoS One

RNA triplexes: from structural principles to biological and biotech applications

(2014) Gitali Devi et al.   Wiley Interdisciplinary Reviews-RNA

Assembly of Liposomes Controlled by Triple Helix Formation

(2013) Ulla Jakobsen et al.   BIOCONJUGATE CHEMISTRY

Triplex-Inspector: an analysis tool for triplex-mediated targeting of genomic loci

(2013) Fabian A. Buske et al.   BIOINFORMATICS

Structure and Mechanical Characterization of DNA i-Motif Nanowires by Molecular Dynamics Simulation

(2013) Raghvendra Pratap Singh et al.   BIOPHYSICAL JOURNAL

Time-resolved fluorescent detection of Hg2+ in a complex environment by conjugating magnetic nanoparticles with a triple-helix molecular switch

(2013) Jing Zheng et al.   CHEMICAL COMMUNICATIONS

Triplex-mediated analysis of cytosine methylation at CpA sites in DNA

(2013) Marie W. Johannsen et al.   CHEMICAL COMMUNICATIONS

Binding Cofactors with Triplex-Based DNA Motifs

(2013) Christoph Kröner et al.   CHEMISTRY-A EUROPEAN JOURNAL

Toward Improved Description of DNA Backbone: Revisiting Epsilon and Zeta Torsion Force Field Parameters

(2013) Marie Zgarbová et al.   Journal of Chemical Theory and Computation

An innate twist between Crick's wobble and Watson-Crick base pairs

(2013) P. Ananth et al.   RNA

Triplex-Directed Recognition of a DNA Nanostructure Assembled by Crossover Strand Exchange

(2012) David A. Rusling et al.   ACS Nano

High-Performance Liquid Chromatography–Electrospray Ionization-Mass Spectrometry Ligand Fishing Assay: A Method for Screening Triplex DNA Binders from Natural Plant Extracts

(2012) Niusheng Xu et al.   ANALYTICAL CHEMISTRY

Spectroscopic and Calorimetric Studies on the Binding of an Indoloquinoline Drug to Parallel and Antiparallel DNA Triplexes

(2012) Fanny Riechert-Krause et al.   BIOCHEMISTRY

Molecular Dynamics of a DNA Holliday Junction: The Inverted Repeat Sequence d(CCGGTACCGG)4

(2012) Elizabeth G. Wheatley et al.   BIOPHYSICAL JOURNAL

A triple helix stabilizes the 3' ends of long noncoding RNAs that lack poly(A) tails

(2012) J. E. Wilusz et al.   GENES & DEVELOPMENT

Reference Simulations of Noncanonical Nucleic Acids with Different χ Variants of the AMBER Force Field: Quadruplex DNA, Quadruplex RNA, and Z-DNA

(2012) Miroslav Krepl et al.   Journal of Chemical Theory and Computation

Fabricating a Reversible and Regenerable Raman-Active Substrate with a Biomolecule-Controlled DNA Nanomachine

(2012) Jing Zheng et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Molecular dynamics simulations of G-DNA and perspectives on the simulation of nucleic acid structures

(2012) Jiří Šponer et al.   METHODS

Triplex DNA-binding proteins are associated with clinical outcomes revealed by proteomic measurements in patients with colorectal cancer

(2012) Laura D Nelson et al.   Molecular Cancer

Reaction path ensemble of the B–Z-DNA transition: a comprehensive atomistic study

(2012) Mahmoud Moradi et al.   NUCLEIC ACIDS RESEARCH

Formation of triple-helical structures by the 3'-end sequences of MALAT1 and MEN  noncoding RNAs

(2012) J. A. Brown et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Optimization of the CHARMM Additive Force Field for DNA: Improved Treatment of the BI/BII Conformational Equilibrium

(2011) Katarina Hart et al.   Journal of Chemical Theory and Computation

Refinement of the Cornell et al. Nucleic Acids Force Field Based on Reference Quantum Chemical Calculations of Glycosidic Torsion Profiles

(2011) Marie Zgarbová et al.   Journal of Chemical Theory and Computation

Potential in vivo roles of nucleic acid triple-helices

(2011) Fabian A. Buske et al.   RNA Biology

New Approaches Toward Recognition of Nucleic Acid Triple Helices

(2010) Dev P. Arya   ACCOUNTS OF CHEMICAL RESEARCH

Human DHX9 Helicase Unwinds Triple-Helical DNA Structures

(2010) Aklank Jain et al.   BIOCHEMISTRY

Spectroscopic and Calorimetric Studies on the Triplex Formation with Oligonucleotide−Ligand Conjugates

(2010) Andrea Eick et al.   BIOCONJUGATE CHEMISTRY

Gold nanoparticle-based colorimetric assay of single-nucleotide polymorphism of triplex DNA

(2010) Xiaoli Zhu et al.   BIOSENSORS & BIOELECTRONICS

Poly(A) Tail Recognition by a Viral RNA Element Through Assembly of a Triple Helix

(2010) R. M. Mitton-Fry et al.   SCIENCE

TTS Mapping: integrative WEB tool for analysis of triplex formation target DNA Sequences, G-quadruplets and non-protein coding regulatory DNA elements in the human genome

(2009) Piroon Jenjaroenpun et al.   BMC GENOMICS

Human initiation protein Orc4 prefers triple stranded DNA

(2009) J. Kusic et al.   MOLECULAR BIOLOGY REPORTS

An intermolecular RNA triplex provides insight into structural determinants for the pseudoknot stimulator of −1 ribosomal frameshifting

(2009) Ming-Yuan Chou et al.   NUCLEIC ACIDS RESEARCH

DNA triple helices: Biological consequences and therapeutic potential

(2008) Aklank Jain et al.   BIOCHIMIE

Repair of DNA lesions associated with triplex-forming oligonucleotides

(2008) Joanna Y. Chin et al.   MOLECULAR CARCINOGENESIS

Molecular dynamics of a κB DNA element: base flipping via cross-strand intercalative stacking in a microsecond-scale simulation

(2008) Cameron Mura et al.   NUCLEIC ACIDS RESEARCH

The triple helix: 50 years later, the outcome

(2008) M. Duca et al.   NUCLEIC ACIDS RESEARCH