标题
Analyzing and interpreting genome data at the network level with ConsensusPathDB
作者
关键词
-
出版物
Nature Protocols
Volume 11, Issue 10, Pages 1889-1907
出版商
Springer Nature
发表日期
2016-09-08
DOI
10.1038/nprot.2016.117
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- High-density genotyping of immune-related loci identifies new SLE risk variants in individuals with Asian ancestry
- (2016) Celi Sun et al. NATURE GENETICS
- Phospho-tyrosine dependent protein-protein interaction network
- (2015) A. Grossmann et al. Molecular Systems Biology
- Analysis of loss-of-function variants and 20 risk factor phenotypes in 8,554 individuals identifies loci influencing chronic disease
- (2015) Alexander H Li et al. NATURE GENETICS
- WikiPathways: capturing the full diversity of pathway knowledge
- (2015) Martina Kutmon et al. NUCLEIC ACIDS RESEARCH
- The Reactome pathway Knowledgebase
- (2015) Antonio Fabregat et al. NUCLEIC ACIDS RESEARCH
- Comprehensive molecular profiling of lung adenocarcinoma
- (2014) Eric A. Collisson et al. NATURE
- Epigenomic analysis of primary human T cells reveals enhancers associated with TH2 memory cell differentiation and asthma susceptibility
- (2014) Grégory Seumois et al. NATURE IMMUNOLOGY
- Gene Ontology Consortium: going forward
- (2014) NUCLEIC ACIDS RESEARCH
- Multiple haplotype-resolved genomes reveal population patterns of gene and protein diplotypes
- (2014) Margret R. Hoehe et al. Nature Communications
- Causal analysis approaches in Ingenuity Pathway Analysis
- (2013) Andreas Krämer et al. BIOINFORMATICS
- Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool
- (2013) Edward Y Chen et al. BMC BIOINFORMATICS
- Gene set analysis methods: statistical models and methodological differences
- (2013) H. Maciejewski BRIEFINGS IN BIOINFORMATICS
- Temporal regulation of EGF signalling networks by the scaffold protein Shc1
- (2013) Yong Zheng et al. NATURE
- Network-based stratification of tumor mutations
- (2013) Matan Hofree et al. NATURE METHODS
- Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells
- (2013) Liying Yan et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Data, information, knowledge and principle: back to metabolism in KEGG
- (2013) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- STAT3 expression, activity and functional consequences of STAT3 inhibition in esophageal squamous cell carcinomas and Barrett’s adenocarcinomas
- (2013) S Timme et al. ONCOGENE
- Cluster-based assessment of protein-protein interaction confidence
- (2012) Atanas Kamburov et al. BMC BIOINFORMATICS
- Human pre-implantation embryo development
- (2012) K. K. Niakan et al. DEVELOPMENT
- A travel guide to Cytoscape plugins
- (2012) Rintaro Saito et al. NATURE METHODS
- IntScore: a web tool for confidence scoring of biological interactions
- (2012) Atanas Kamburov et al. NUCLEIC ACIDS RESEARCH
- STRING v9.1: protein-protein interaction networks, with increased coverage and integration
- (2012) Andrea Franceschini et al. NUCLEIC ACIDS RESEARCH
- The ConsensusPathDB interaction database: 2013 update
- (2012) Atanas Kamburov et al. NUCLEIC ACIDS RESEARCH
- Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges
- (2012) Purvesh Khatri et al. PLoS Computational Biology
- Molecular signatures database (MSigDB) 3.0
- (2011) A. Liberzon et al. BIOINFORMATICS
- Chipster: user-friendly analysis software for microarray and other high-throughput data
- (2011) M Aleksi Kallio et al. BMC GENOMICS
- Interactome Networks and Human Disease
- (2011) Marc Vidal et al. CELL
- Hallmarks of Cancer: The Next Generation
- (2011) Douglas Hanahan et al. CELL
- Effects of Uremic Toxins on Transport and Metabolism of Different Biopharmaceutics Drug Disposition Classification System Xenobiotics
- (2011) Maribel Reyes et al. JOURNAL OF PHARMACEUTICAL SCIENCES
- Web-based inference of biological patterns, functions and pathways from metabolomic data using MetaboAnalyst
- (2011) Jianguo Xia et al. Nature Protocols
- Human Embryonic Stem Cell Derived Hepatocyte-Like Cells as a Tool for In Vitro Hazard Assessment of Chemical Carcinogenicity
- (2011) Reha Yildirimman et al. TOXICOLOGICAL SCIENCES
- GOSemSim: an R package for measuring semantic similarity among GO terms and gene products
- (2010) G. Yu et al. BIOINFORMATICS
- Evidence mining and novelty assessment of protein–protein interactions with the ConsensusPathDB plugin for Cytoscape
- (2010) Konstantin Pentchev et al. BIOINFORMATICS
- Pathway Commons, a web resource for biological pathway data
- (2010) E. G. Cerami et al. NUCLEIC ACIDS RESEARCH
- ConsensusPathDB: toward a more complete picture of cell biology
- (2010) Atanas Kamburov et al. NUCLEIC ACIDS RESEARCH
- Dynamic modularity in protein interaction networks predicts breast cancer outcome
- (2009) Ian W Taylor et al. NATURE BIOTECHNOLOGY
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
- Geometric De-noising of Protein-Protein Interaction Networks
- (2009) Oleksii Kuchaiev et al. PLoS Computational Biology
- ConsensusPathDB—a database for integrating human functional interaction networks
- (2008) Atanas Kamburov et al. NUCLEIC ACIDS RESEARCH
- Estimating the size of the human interactome
- (2008) M. P. H. Stumpf et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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