Web-based inference of biological patterns, functions and pathways from metabolomic data using MetaboAnalyst

The Chemical Translation Service--a web-based tool to improve standardization of metabolomic reports

(2010) G. Wohlgemuth et al.   BIOINFORMATICS

MetPA: a web-based metabolomics tool for pathway analysis and visualization

(2010) J. Xia et al.   BIOINFORMATICS

MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

(2010) Tomáš Pluskal et al.   BMC BIOINFORMATICS

MSEA: a web-based tool to identify biologically meaningful patterns in quantitative metabolomic data

(2010) J. Xia et al.   NUCLEIC ACIDS RESEARCH

MetAlign: Interface-Driven, Versatile Metabolomics Tool for Hyphenated Full-Scan Mass Spectrometry Data Preprocessing

(2009) Arjen Lommen   ANALYTICAL CHEMISTRY

High-Throughput Quantitative Metabolomics: Workflow for Cultivation, Quenching, and Analysis of Yeast in a Multiwell Format

(2009) Jennifer Christina Ewald et al.   ANALYTICAL CHEMISTRY

Automics: an integrated platform for NMR-based metabonomics spectral processing and data analysis

(2009) Tao Wang et al.   BMC BIOINFORMATICS

Variation in the human lipidome associated with coffee consumption as revealed by quantitative targeted metabolomics

(2009) Elisabeth Altmaier et al.   MOLECULAR NUTRITION & FOOD RESEARCH

PathExpress update: the enzyme neighbourhood method of associating gene-expression data with metabolic pathways

(2009) N. Goffard et al.   NUCLEIC ACIDS RESEARCH

SMPDB: The Small Molecule Pathway Database

(2009) Alex Frolkis et al.   NUCLEIC ACIDS RESEARCH

VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology

(2009) Zhenjun Hu et al.   NUCLEIC ACIDS RESEARCH

MetaboAnalyst: a web server for metabolomic data analysis and interpretation

(2009) J. Xia et al.   NUCLEIC ACIDS RESEARCH

Quantitative Metabolomics Reveals an Epigenetic Blueprint for Iron Acquisition in Uropathogenic Escherichia coli

(2009) Jeffrey P. Henderson et al.   PLoS Pathogens

MeltDB: a software platform for the analysis and integration of metabolomics experiment data

(2008) Heiko Neuweger et al.   BIOINFORMATICS

TagFinder for the quantitative analysis of gas chromatography—mass spectrometry (GC-MS)-based metabolite profiling experiments

(2008) Alexander Luedemann et al.   BIOINFORMATICS

MetaboMiner – semi-automated identification of metabolites from 2D NMR spectra of complex biofluids

(2008) Jianguo Xia et al.   BMC BIOINFORMATICS

Quantitative 1H NMR metabolomics reveals extensive metabolic reprogramming of primary and secondary metabolism in elicitor-treated opium poppy cell cultures

(2008) Katherine G Zulak et al.   BMC PLANT BIOLOGY

Assessment of PLSDA cross validation

(2008) Johan A. Westerhuis et al.   Metabolomics

Metabolite identification via the Madison Metabolomics Consortium Database

(2008) Qiu Cui et al.   NATURE BIOTECHNOLOGY

HMDB: a knowledgebase for the human metabolome

(2008) D. S. Wishart et al.   NUCLEIC ACIDS RESEARCH

Quantitative metabolomics using NMR

(2008) David S. Wishart   TRAC-TRENDS IN ANALYTICAL CHEMISTRY