标题
A travel guide to Cytoscape plugins
作者
关键词
-
出版物
NATURE METHODS
Volume 9, Issue 11, Pages 1069-1076
出版商
Springer Nature
发表日期
2012-11-07
DOI
10.1038/nmeth.2212
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- clusterMaker: a multi-algorithm clustering plugin for Cytoscape
- (2012) John H Morris et al. BMC BIOINFORMATICS
- PiNGO: a Cytoscape plugin to find candidate genes in biological networks
- (2011) M. Smoot et al. BIOINFORMATICS
- OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms
- (2011) Y. Hao et al. BIOINFORMATICS
- iCTNet: A Cytoscape plugin to produce and analyze integrative complex traits networks
- (2011) Lili Wang et al. BMC BIOINFORMATICS
- MINE: Module Identification in Networks
- (2011) Kahn Rhrissorrakrai et al. BMC BIOINFORMATICS
- PSICQUIC and PSISCORE: accessing and scoring molecular interactions
- (2011) Bruno Aranda et al. NATURE METHODS
- Comprehensive cluster analysis with Transitivity Clustering
- (2011) Tobias Wittkop et al. Nature Protocols
- Assembling global maps of cellular function through integrative analysis of physical and genetic networks
- (2011) Rohith Srivas et al. Nature Protocols
- Analyzing and visualizing residue networks of protein structures
- (2011) Nadezhda T. Doncheva et al. TRENDS IN BIOCHEMICAL SCIENCES
- MODEVO: exploring modularity and evolution of protein interaction networks
- (2010) M. Wozniak et al. BIOINFORMATICS
- OmicsAnalyzer: a Cytoscape plug-in suite for modeling omics data: Fig. 1.
- (2010) Tian Xia et al. BIOINFORMATICS
- Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks
- (2010) Jing Gao et al. BIOINFORMATICS
- Evidence mining and novelty assessment of protein–protein interactions with the ConsensusPathDB plugin for Cytoscape
- (2010) Konstantin Pentchev et al. BIOINFORMATICS
- GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop
- (2010) J. Montojo et al. BIOINFORMATICS
- The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services
- (2010) Martijn P van Iersel et al. BMC BIOINFORMATICS
- NeMo: Network Module identification in Cytoscape
- (2010) Corban G Rivera et al. BMC BIOINFORMATICS
- Computational approaches for detecting protein complexes from protein interaction networks: a survey
- (2010) Xiaoli Li et al. BMC GENOMICS
- ExprEssence - Revealing the essence of differential experimental data in the context of an interaction/regulation net-work
- (2010) Gregor Warsow et al. BMC Systems Biology
- Glioblastoma-Specific Protein Interaction Network Identifies PP1A and CSK21 as Connecting Molecules between Cell Cycle-Associated Genes
- (2010) J. Ladha et al. CANCER RESEARCH
- High-throughput generation, optimization and analysis of genome-scale metabolic models
- (2010) Christopher S Henry et al. NATURE BIOTECHNOLOGY
- The BioPAX community standard for pathway data sharing
- (2010) Emek Demir et al. NATURE BIOTECHNOLOGY
- AltAnalyze and DomainGraph: analyzing and visualizing exon expression data
- (2010) Dorothea Emig et al. NUCLEIC ACIDS RESEARCH
- Pathway Commons, a web resource for biological pathway data
- (2010) E. G. Cerami et al. NUCLEIC ACIDS RESEARCH
- The BioGRID Interaction Database: 2011 update
- (2010) C. Stark et al. NUCLEIC ACIDS RESEARCH
- Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation
- (2010) Daniele Merico et al. PLoS One
- PerturbationAnalyzer: a tool for investigating the effects of concentration perturbation on protein interaction networks
- (2009) F. Li et al. BIOINFORMATICS
- Analyzing biological network parameters with CentiScaPe
- (2009) Giovanni Scardoni et al. BIOINFORMATICS
- ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks
- (2009) Gabriela Bindea et al. BIOINFORMATICS
- BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks
- (2009) Carito Guziolowski et al. BMC GENOMICS
- How to visually interpret biological data using networks
- (2009) Daniele Merico et al. NATURE BIOTECHNOLOGY
- BioMart Central Portal—unified access to biological data
- (2009) Syed Haider et al. NUCLEIC ACIDS RESEARCH
- VistaClara: an expression browser plug-in for Cytoscape
- (2008) R. Kincaid et al. BIOINFORMATICS
- Integrating and annotating the interactome using the MiMI plugin for cytoscape
- (2008) Jing Gao et al. BIOINFORMATICS
- FERN – a Java framework for stochastic simulation and evaluation of reaction networks
- (2008) Florian Erhard et al. BMC BIOINFORMATICS
- Characterization of the Mouse Pancreatic Islet Proteome and Comparative Analysis with Other Mouse Tissues
- (2008) Vladislav A. Petyuk et al. JOURNAL OF PROTEOME RESEARCH
- Literature-curated protein interaction datasets
- (2008) Michael E Cusick et al. NATURE METHODS
- WikiPathways: Pathway Editing for the People
- (2008) Alexander R Pico et al. PLOS BIOLOGY
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