Genome sequences of 36,000- to 37,000-year-old modern humans at Buran-Kaya III in Crimea

Palaeogenomics of Upper Palaeolithic to Neolithic European hunter-gatherers

(2023) Cosimo Posth et al.   NATURE

Subsistence of early anatomically modern humans in Europe as evidenced in the Protoaurignacian occupations of Fumane Cave, Italy

(2023) Ana B. Marín-Arroyo et al.   Scientific Reports

On the limits of fitting complex models of population history to f-statistics

(2023) Robert Maier et al.   eLife

Placing Ancient DNA Sequences into Reference Phylogenies

(2022) Rui Martiniano et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetics and Material Culture Support Repeated Expansions into Paleolithic Eurasia from a Population Hub Out of Africa

(2022) Leonardo Vallini et al.   Genome Biology and Evolution

Modern human incursion into Neanderthal territories 54,000 years ago at Mandrin, France

(2022) Ludovic Slimak et al.   Science Advances

Three assays for in-solution enrichment of ancient human DNA at more than a million SNPs

(2022) Nadin Rohland et al.   GENOME RESEARCH

Contamination detection in sequencing studies using the mitochondrial phylogeny

(2021) Hansi Weissensteiner et al.   GENOME RESEARCH

Million-year-old DNA sheds light on the genomic history of mammoths

(2021) Tom van der Valk et al.   NATURE

Twelve years of SAMtools and BCFtools

(2021) Petr Danecek et al.   GigaScience

Genome of Peştera Muierii skull shows high diversity and low mutational load in pre-glacial Europe

(2021) Emma Svensson et al.   CURRENT BIOLOGY

Initial Upper Palaeolithic humans in Europe had recent Neanderthal ancestry

(2021) Mateja Hajdinjak et al.   NATURE

A genome sequence from a modern human skull over 45,000 years old from Zlatý kůň in Czechia

(2021) Kay Prüfer et al.   Nature Ecology & Evolution

Initial Upper Palaeolithic Homo sapiens from Bacho Kiro Cave, Bulgaria

(2020) Jean-Jacques Hublin et al.   NATURE

Ancient genomes from present-day France unveil 7,000 years of its demographic history

(2020) Samantha Brunel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Insights into human genetic variation and population history from 929 diverse genomes

(2020) Anders Bergström et al.   SCIENCE

THE INTCAL20 NORTHERN HEMISPHERE RADIOCARBON AGE CALIBRATION CURVE (0–55 CAL kBP)

(2020) Paula J Reimer et al.   RADIOCARBON

A revised AMS and tephra chronology for the Late Middle to Early Upper Paleolithic occupations of Ortvale Klde, Republic of Georgia

(2020) Victoria L. Cullen et al.   JOURNAL OF HUMAN EVOLUTION

Limits of long-term selection against Neandertal introgression

(2019) Martin Petr et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The genetic history of admixture across inner Eurasia

(2019) Choongwon Jeong et al.   Nature Ecology & Evolution

Quantifying and reducing spurious alignments for the analysis of ultra-short ancient DNA sequences

(2018) Cesare de Filippo et al.   BMC BIOLOGY

Extending the spectrum of DNA sequences retrieved from ancient bones and teeth

(2017) Isabelle Glocke et al.   GENOME RESEARCH

Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers

(2017) Martin Sikora et al.   SCIENCE

The Middle to Upper Paleolithic Sequence of Buran-Kaya III (Crimea, Ukraine): New Stratigraphic, Paleoenvironmental, and Chronological Results

(2017) Stéphane Péan et al.   RADIOCARBON

High-precision 14C and 40Ar/39Ar dating of the Campanian Ignimbrite (Y-5) reconciles the time-scales of climatic-cultural processes at 40 ka

(2017) Biagio Giaccio et al.   Scientific Reports

Past climate changes, population dynamics and the origin of Bison in Europe

(2016) Diyendo Massilani et al.   BMC BIOLOGY

Genomic insights into the origin of farming in the ancient Near East

(2016) Iosif Lazaridis et al.   NATURE

The genetic history of Ice Age Europe

(2016) Qiaomei Fu et al.   NATURE

LNCediting: a database for functional effects of RNA editing in lncRNAs

(2016) Jing Gong et al.   NUCLEIC ACIDS RESEARCH

HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing

(2016) Hansi Weissensteiner et al.   NUCLEIC ACIDS RESEARCH

Reconstructing the plinian and co-ignimbrite sources of large volcanic eruptions: A novel approach for the Campanian Ignimbrite

(2016) Alejandro Marti et al.   Scientific Reports

Library construction for ancient genomics: Single strand or double strand?

(2016) E. Andrew Bennett et al.   BIOTECHNIQUES

Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data

(2015) Konstantin Okonechnikov et al.   BIOINFORMATICS

Reducing microbial and human contamination in DNA extractions from ancient bones and teeth

(2015) Petra Korlević et al.   BIOTECHNIQUES

Campanian Ignimbrite volcanism, climate, and the final decline of the Neanderthals

(2015) Benjamin A. Black et al.   GEOLOGY

An early modern human from Romania with a recent Neanderthal ancestor

(2015) Qiaomei Fu et al.   NATURE

Population genomics of Bronze Age Eurasia

(2015) Morten E. Allentoft et al.   NATURE

The modern human colonization of western Eurasia: when and where?

(2015) Jean-Jacques Hublin   QUATERNARY SCIENCE REVIEWS

Upper Palaeolithic genomes reveal deep roots of modern Eurasians

(2015) Eppie R. Jones et al.   Nature Communications

The timing and spatiotemporal patterning of Neanderthal disappearance

(2014) Tom Higham et al.   NATURE

leeHom: adaptor trimming and merging for Illumina sequencing reads

(2014) Gabriel Renaud et al.   NUCLEIC ACIDS RESEARCH

Genomic structure in Europeans dating back at least 36,200 years

(2014) A. Seguin-Orlando et al.   SCIENCE

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

Accurate sex identification of ancient human remains using DNA shotgun sequencing

(2013) Pontus Skoglund et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA

(2013) Marie-Theres Gansauge et al.   Nature Protocols

The Campanian Ignimbrite Eruption: New Data on Volcanic Ash Dispersal and Its Potential Impact on Human Evolution

(2013) Kathryn E. Fitzsimmons et al.   PLoS One

DNA analysis of an early modern human from Tianyuan Cave, China

(2013) Q. Fu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

The Oldest Anatomically Modern Humans from Far Southeast Europe: Direct Dating, Culture and Behavior

(2011) Sandrine Prat et al.   PLoS One

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS