标题
Placing Ancient DNA Sequences into Reference Phylogenies
作者
关键词
-
出版物
MOLECULAR BIOLOGY AND EVOLUTION
Volume 39, Issue 2, Pages -
出版商
Oxford University Press (OUP)
发表日期
2022-01-26
DOI
10.1093/molbev/msac017
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Y-LineageTracker: a high-throughput analysis framework for Y-chromosomal next-generation sequencing data
- (2021) Hao Chen et al. BMC BIOINFORMATICS
- Genomic insights into the formation of human populations in East Asia
- (2021) Chuan-Chao Wang et al. NATURE
- Environmental genomics of Late Pleistocene black bears and giant short-faced bears
- (2021) Mikkel Winther Pedersen et al. CURRENT BIOLOGY
- Late Quaternary dynamics of Arctic biota from ancient environmental genomics
- (2021) Yucheng Wang et al. NATURE
- Ancient West African foragers in the context of African population history
- (2020) Mark Lipson et al. NATURE
- Insights into human genetic variation and population history from 929 diverse genomes
- (2020) Anders Bergström et al. SCIENCE
- A Southeast Asian origin for present-day non-African human Y chromosomes
- (2020) Pille Hallast et al. HUMAN GENETICS
- Ancient genomes reveal complex patterns of population movement, interaction, and replacement in sub-Saharan Africa
- (2020) Ke Wang et al. Science Advances
- HaploGrouper: A generalized approach to haplogroup classification
- (2020) Anuradha Jagadeesan et al. BIOINFORMATICS
- Palaeo-Eskimo genetic ancestry and the peopling of Chukotka and North America
- (2019) Pavel Flegontov et al. NATURE
- The population history of northeastern Siberia since the Pleistocene
- (2019) Martin Sikora et al. NATURE
- Ancient DNA reveals a multistep spread of the first herders into sub-Saharan Africa
- (2019) Mary E. Prendergast et al. SCIENCE
- Ancient DNA sheds light on the genetic origins of early Iron Age Philistines
- (2019) Michal Feldman et al. Science Advances
- Ancient Genomes Reveal Yamnaya-Related Ancestry and a Potential Source of Indo-European Speakers in Iron Age Tianshan
- (2019) Chao Ning et al. CURRENT BIOLOGY
- The formation of human populations in South and Central Asia
- (2019) Vagheesh M. Narasimhan et al. SCIENCE
- Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia
- (2019) Liisa Loog et al. MOLECULAR ECOLOGY
- ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
- (2018) Emmanuel Paradis et al. BIOINFORMATICS
- Yleaf: Software for Human Y-Chromosomal Haplogroup Inference from Next-Generation Sequencing Data
- (2018) Arwin Ralf et al. MOLECULAR BIOLOGY AND EVOLUTION
- 137 ancient human genomes from across the Eurasian steppes
- (2018) Peter de Barros Damgaard et al. NATURE
- Ancient genomes from North Africa evidence prehistoric migrations to the Maghreb from both the Levant and Europe
- (2018) Rosa Fregel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Pleistocene North African genomes link Near Eastern and sub-Saharan African human populations
- (2018) Marieke van de Loosdrecht et al. SCIENCE
- The first horse herders and the impact of early Bronze Age steppe expansions into Asia
- (2018) Peter de Barros Damgaard et al. SCIENCE
- The genomic history of southeastern Europe
- (2018) Iain Mathieson et al. NATURE
- The study of human Y chromosome variation through ancient DNA
- (2017) Toomas Kivisild HUMAN GENETICS
- Female exogamy and gene pool diversification at the transition from the Final Neolithic to the Early Bronze Age in central Europe
- (2017) Corina Knipper et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Southern African ancient genomes estimate modern human divergence to 350,000 to 260,000 years ago
- (2017) Carina M. Schlebusch et al. SCIENCE
- Archaeogenomic evidence reveals prehistoric matrilineal dynasty
- (2017) Douglas J. Kennett et al. Nature Communications
- Ancient Egyptian mummy genomes suggest an increase of Sub-Saharan African ancestry in post-Roman periods
- (2017) Verena J. Schuenemann et al. Nature Communications
- Reconstructing genetic history of Siberian and Northeastern European populations
- (2016) Emily H.M. Wong et al. GENOME RESEARCH
- Genomic insights into the origin of farming in the ancient Near East
- (2016) Iosif Lazaridis et al. NATURE
- Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences
- (2016) G David Poznik et al. NATURE GENETICS
- Phylogeographic Refinement and Large Scale Genotyping of Human Y Chromosome Haplogroup E Provide New Insights into the Dispersal of Early Pastoralists in the African Continent
- (2015) Beniamino Trombetta et al. Genome Biology and Evolution
- A recent bottleneck of Y chromosome diversity coincides with a global change in culture
- (2015) Monika Karmin et al. GENOME RESEARCH
- Genome-wide ancestry of 17th-century enslaved Africans from the Caribbean
- (2015) Hannes Schroeder et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ancient Ethiopian genome reveals extensive Eurasian admixture in Eastern Africa
- (2015) M. Gallego Llorente et al. SCIENCE
- Upper Palaeolithic genomes reveal deep roots of modern Eurasians
- (2015) Eppie R. Jones et al. Nature Communications
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Ancient human genomes suggest three ancestral populations for present-day Europeans
- (2014) Iosif Lazaridis et al. NATURE
- Genome sequence of a 45,000-year-old modern human from western Siberia
- (2014) Qiaomei Fu et al. NATURE
- Genome flux and stasis in a five millennium transect of European prehistory
- (2014) Cristina Gamba et al. Nature Communications
- An African American Paternal Lineage Adds an Extremely Ancient Root to the Human Y Chromosome Phylogenetic Tree
- (2013) Fernando L. Mendez et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Sequencing Y Chromosomes Resolves Discrepancy in Time to Common Ancestor of Males Versus Females
- (2013) G. D. Poznik et al. SCIENCE
- Ancient DNA Damage
- (2013) J. Dabney et al. Cold Spring Harbor Perspectives in Biology
- Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood
- (2011) Simon A. Berger et al. SYSTEMATIC BIOLOGY
- phytools: an R package for phylogenetic comparative biology (and other things)
- (2011) Liam J. Revell Methods in Ecology and Evolution
- pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
- (2010) Frederick A Matsen et al. BMC BIOINFORMATICS
- Computational challenges in the analysis of ancient DNA
- (2010) Kay Prüfer et al. GENOME BIOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Y-chromosomal evidence of a pastoralist migration through Tanzania to southern Africa
- (2008) B. M. Henn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now