Initial Upper Palaeolithic humans in Europe had recent Neanderthal ancestry

A genome sequence from a modern human skull over 45,000 years old from Zlatý kůň in Czechia

(2021) Kay Prüfer et al.   Nature Ecology & Evolution

Initial Upper Palaeolithic Homo sapiens from Bacho Kiro Cave, Bulgaria

(2020) Jean-Jacques Hublin et al.   NATURE

A 14C chronology for the Middle to Upper Palaeolithic transition at Bacho Kiro Cave, Bulgaria

(2020) Helen Fewlass et al.   Nature Ecology & Evolution

Manual and automated preparation of single-stranded DNA libraries for the sequencing of DNA from ancient biological remains and other sources of highly degraded DNA

(2020) Marie-Theres Gansauge et al.   Nature Protocols

A high-coverage Neandertal genome from Chagyrskaya Cave

(2020) Fabrizio Mafessoni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Limits of long-term selection against Neandertal introgression

(2019) Martin Petr et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

admixr—R package for reproducible analyses using ADMIXTOOLS

(2019) Martin Petr et al.   BIOINFORMATICS

Contrasting Paternal and Maternal Genetic Histories of Thai and Lao Populations

(2019) Wibhu Kutanan et al.   MOLECULAR BIOLOGY AND EVOLUTION

The population history of northeastern Siberia since the Pleistocene

(2019) Martin Sikora et al.   NATURE

Kinship-based social inequality in Bronze Age Europe

(2019) Alissa Mittnik et al.   SCIENCE

The Northern Route for Human dispersal in Central and Northeast Asia: New evidence from the site of Tolbor-16, Mongolia

(2019) Nicolas Zwyns et al.   Scientific Reports

Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans

(2018) J. Víctor Moreno-Mayar et al.   NATURE

Reconstructing the genetic history of late Neanderthals

(2018) Mateja Hajdinjak et al.   NATURE

Early human dispersals within the Americas

(2018) J. Víctor Moreno-Mayar et al.   SCIENCE

Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers

(2017) Martin Sikora et al.   SCIENCE

A high-coverage Neandertal genome from Vindija Cave in Croatia

(2017) Kay Prüfer et al.   SCIENCE

The Combined Landscape of Denisovan and Neanderthal Ancestry in Present-Day Humans

(2016) Sriram Sankararaman et al.   CURRENT BIOLOGY

Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins

(2016) Matthias Meyer et al.   NATURE

Genomic insights into the origin of farming in the ancient Near East

(2016) Iosif Lazaridis et al.   NATURE

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations

(2016) Swapan Mallick et al.   NATURE

The genetic history of Ice Age Europe

(2016) Qiaomei Fu et al.   NATURE

Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences

(2016) G David Poznik et al.   NATURE GENETICS

Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals

(2016) B. Vernot et al.   SCIENCE

Reducing microbial and human contamination in DNA extractions from ancient bones and teeth

(2015) Petra Korlević et al.   BIOTECHNIQUES

The ancestry and affiliations of Kennewick Man

(2015) Morten Rasmussen et al.   NATURE

Massive migration from the steppe was a source for Indo-European languages in Europe

(2015) Wolfgang Haak et al.   NATURE

An early modern human from Romania with a recent Neanderthal ancestor

(2015) Qiaomei Fu et al.   NATURE

The modern human colonization of western Eurasia: when and where?

(2015) Jean-Jacques Hublin   QUATERNARY SCIENCE REVIEWS

The makers of the Protoaurignacian and implications for Neandertal extinction

(2015) S. Benazzi et al.   SCIENCE

Ancient Ethiopian genome reveals extensive Eurasian admixture in Eastern Africa

(2015) M. Gallego Llorente et al.   SCIENCE

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Ancient human genomes suggest three ancestral populations for present-day Europeans

(2014) Iosif Lazaridis et al.   NATURE

The genome of a Late Pleistocene human from a Clovis burial site in western Montana

(2014) Morten Rasmussen et al.   NATURE

The timing and spatiotemporal patterning of Neanderthal disappearance

(2014) Tom Higham et al.   NATURE

Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European

(2014) Iñigo Olalde et al.   NATURE

Genome sequence of a 45,000-year-old modern human from western Siberia

(2014) Qiaomei Fu et al.   NATURE

leeHom: adaptor trimming and merging for Illumina sequencing reads

(2014) Gabriel Renaud et al.   NUCLEIC ACIDS RESEARCH

Rethinking the initial Upper Paleolithic

(2014) Steven L. Kuhn et al.   QUATERNARY INTERNATIONAL

Genomic structure in Europeans dating back at least 36,200 years

(2014) A. Seguin-Orlando et al.   SCIENCE

Genome flux and stasis in a five millennium transect of European prehistory

(2014) Cristina Gamba et al.   Nature Communications

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

(2013) Maanasa Raghavan et al.   NATURE

The complete genome sequence of a Neanderthal from the Altai Mountains

(2013) Kay Prüfer et al.   NATURE

DNA analysis of an early modern human from Tianyuan Cave, China

(2013) Q. Fu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

A High-Coverage Genome Sequence from an Archaic Denisovan Individual

(2012) M. Meyer et al.   SCIENCE

New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing

(2012) Andreas Keller et al.   Nature Communications

The earliest evidence for anatomically modern humans in northwestern Europe

(2011) Tom Higham et al.   NATURE

Early dispersal of modern humans in Europe and implications for Neanderthal behaviour

(2011) Stefano Benazzi et al.   NATURE

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

(2011) Martin Kircher et al.   NUCLEIC ACIDS RESEARCH

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Ancient human genome sequence of an extinct Palaeo-Eskimo

(2010) Morten Rasmussen et al.   NATURE

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS