Genome of Peştera Muierii skull shows high diversity and low mutational load in pre-glacial Europe

Initial Upper Palaeolithic humans in Europe had recent Neanderthal ancestry

(2021) Mateja Hajdinjak et al.   NATURE

A genome sequence from a modern human skull over 45,000 years old from Zlatý kůň in Czechia

(2021) Kay Prüfer et al.   Nature Ecology & Evolution

Initial Upper Palaeolithic Homo sapiens from Bacho Kiro Cave, Bulgaria

(2020) Jean-Jacques Hublin et al.   NATURE

Limits of long-term selection against Neandertal introgression

(2019) Martin Petr et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The population history of northeastern Siberia since the Pleistocene

(2019) Martin Sikora et al.   NATURE

A catalog of single nucleotide changes distinguishing modern humans from archaic hominins

(2019) Martin Kuhlwilm et al.   Scientific Reports

Direct Evidence of an Increasing Mutational Load in Humans

(2019) Stéphane Aris-Brosou   MOLECULAR BIOLOGY AND EVOLUTION

The HIrisPlex-S system for eye, hair and skin colour prediction from DNA: Introduction and forensic developmental validation

(2018) Lakshmi Chaitanya et al.   Forensic Science International-Genetics

Estimating genetic kin relationships in prehistoric populations

(2018) Jose Manuel Monroy Kuhn et al.   PLoS One

Pleistocene North African genomes link Near Eastern and sub-Saharan African human populations

(2018) Marieke van de Loosdrecht et al.   SCIENCE

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Population genomics of Mesolithic Scandinavia: Investigating early postglacial migration routes and high-latitude adaptation

(2018) Torsten Günther et al.   PLOS BIOLOGY

CADD: predicting the deleteriousness of variants throughout the human genome

(2018) Philipp Rentzsch et al.   NUCLEIC ACIDS RESEARCH

Was inter-population connectivity of Neanderthals and modern humans the driver of the Upper Paleolithic transition rather than its product?

(2018) Gili Greenbaum et al.   QUATERNARY SCIENCE REVIEWS

Extending the spectrum of DNA sequences retrieved from ancient bones and teeth

(2017) Isabelle Glocke et al.   GENOME RESEARCH

The Genomic Health of Ancient Hominins

(2017) Ali J. Berens et al.   HUMAN BIOLOGY

Tracing the peopling of the world through genomics

(2017) Rasmus Nielsen et al.   NATURE

Loci associated with skin pigmentation identified in African populations

(2017) Nicholas G. Crawford et al.   SCIENCE

Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers

(2017) Martin Sikora et al.   SCIENCE

A high-coverage Neandertal genome from Vindija Cave in Croatia

(2017) Kay Prüfer et al.   SCIENCE

pong: fast analysis and visualization of latent clusters in population genetic data

(2016) Aaron A. Behr et al.   BIOINFORMATICS

Polymorphisms and expression of IL-32: impact on genetic susceptibility and clinical outcome of lung cancer

(2016) Yanwen Wang et al.   BIOMARKERS

Pleistocene Mitochondrial Genomes Suggest a Single Major Dispersal of Non-Africans and a Late Glacial Population Turnover in Europe

(2016) Cosimo Posth et al.   CURRENT BIOLOGY

The impact of recent population history on the deleterious mutation load in humans and close evolutionary relatives

(2016) Yuval B Simons et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Genomic insights into the origin of farming in the ancient Near East

(2016) Iosif Lazaridis et al.   NATURE

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations

(2016) Swapan Mallick et al.   NATURE

The genetic history of Ice Age Europe

(2016) Qiaomei Fu et al.   NATURE

Meta-analysis of 2,104 trios provides support for 10 new genes for intellectual disability

(2016) Stefan H Lelieveld et al.   NATURE NEUROSCIENCE

The mitogenome of a 35,000-year-old Homo sapiens from Europe supports a Palaeolithic back-migration to Africa

(2016) M. Hervella et al.   Scientific Reports

The last Eurasian ice sheets - a chronological database and time-slice reconstruction, DATED-1

(2015) Anna L. C. Hughes et al.   BOREAS

Alternatively spliced isoforms of IL-32 differentially influence cell death pathways in cancer cell lines

(2015) Bas Heinhuis et al.   CARCINOGENESIS

Loss of PTPN12 Stimulates Progression of ErbB2-Dependent Breast Cancer by Enhancing Cell Survival, Migration, and Epithelial-to-Mesenchymal Transition

(2015) Juan Li et al.   MOLECULAR AND CELLULAR BIOLOGY

Massive migration from the steppe was a source for Indo-European languages in Europe

(2015) Wolfgang Haak et al.   NATURE

An early modern human from Romania with a recent Neanderthal ancestor

(2015) Qiaomei Fu et al.   NATURE

A global reference for human genetic variation

(2015) Richard A. Gibbs et al.   NATURE

No evidence that selection has been less effective at removing deleterious mutations in Europeans than in Africans

(2015) Ron Do et al.   NATURE GENETICS

Ancient genomes link early farmers from Atapuerca in Spain to modern-day Basques

(2015) Torsten Günther et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distance from sub-Saharan Africa predicts mutational load in diverse human genomes

(2015) Brenna M. Henn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Association of genetic polymorphisms of interleukins with gastric cancer and precancerous gastric lesions in a high-risk Chinese population

(2015) Yu-Mei Wang et al.   TUMOR BIOLOGY

Significant association between IL-32 gene polymorphisms and susceptibility to endometrial cancer in Chinese Han women

(2015) Xiuzhang Yu et al.   TUMOR BIOLOGY

Upper Palaeolithic genomes reveal deep roots of modern Eurasians

(2015) Eppie R. Jones et al.   Nature Communications

Improving access to endogenous DNA in ancient bones and teeth

(2015) Peter B. Damgaard et al.   Scientific Reports

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

The history of the North African mitochondrial DNA haplogroup U6 gene flow into the African, Eurasian and American continents

(2014) Bernard Secher et al.   BMC EVOLUTIONARY BIOLOGY

Further delineation of the KBG syndrome phenotype caused by ANKRD11 aberrations

(2014) Charlotte W Ockeloen et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Ancient human genomes suggest three ancestral populations for present-day Europeans

(2014) Iosif Lazaridis et al.   NATURE

Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European

(2014) Iñigo Olalde et al.   NATURE

Genome sequence of a 45,000-year-old modern human from western Siberia

(2014) Qiaomei Fu et al.   NATURE

Genomic structure in Europeans dating back at least 36,200 years

(2014) A. Seguin-Orlando et al.   SCIENCE

Genomic Diversity and Admixture Differs for Stone-Age Scandinavian Foragers and Farmers

(2014) P. Skoglund et al.   SCIENCE

Genome flux and stasis in a five millennium transect of European prehistory

(2014) Cristina Gamba et al.   Nature Communications

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

A promoter polymorphism in human interleukin-32 modulates its expression and influences the risk and the outcome of epithelial cell-derived thyroid carcinoma

(2013) T. S. Plantinga et al.   CARCINOGENESIS

Novel insights into the biology of interleukin-32

(2013) Leo A. B. Joosten et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Accurate sex identification of ancient human remains using DNA shotgun sequencing

(2013) Pontus Skoglund et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

(2013) Maanasa Raghavan et al.   NATURE

The complete genome sequence of a Neanderthal from the Altai Mountains

(2013) Kay Prüfer et al.   NATURE

DNA analysis of an early modern human from Tianyuan Cave, China

(2013) Q. Fu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

(2013) J. Dabney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Detecting and Estimating Contamination of Human DNA Samples in Sequencing and Array-Based Genotype Data

(2012) Goo Jun et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

Genetic variation in Toll-like receptors and disease susceptibility

(2012) Mihai G Netea et al.   NATURE IMMUNOLOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Diagnostic Exome Sequencing in Persons with Severe Intellectual Disability

(2012) Joep de Ligt et al.   NEW ENGLAND JOURNAL OF MEDICINE

Temporal Patterns of Nucleotide Misincorporations and DNA Fragmentation in Ancient DNA

(2012) Susanna Sawyer et al.   PLoS One

Ancient DNA from Hunter-Gatherer and Farmer Groups from Northern Spain Supports a Random Dispersion Model for the Neolithic Expansion into Europe

(2012) Montserrat Hervella et al.   PLoS One

Origins and Genetic Legacy of Neolithic Farmers and Hunter-Gatherers in Europe

(2012) P. Skoglund et al.   SCIENCE

A High-Coverage Genome Sequence from an Archaic Denisovan Individual

(2012) M. Meyer et al.   SCIENCE

Genomic Ancestry of North Africans Supports Back-to-Africa Migrations

(2012) Brenna M. Henn et al.   PLoS Genetics

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Early dispersal of modern humans in Europe and implications for Neanderthal behaviour

(2011) Stefano Benazzi et al.   NATURE

Comparing Spatial Maps of Human Population-Genetic Variation Using Procrustes Analysis

(2010) Chaolong Wang et al.   Statistical Applications in Genetics and Molecular Biology

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

The spread of modern humans in Europe

(2009) J. F. Hoffecker   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Craniosynostosis in the Middle Pleistocene human Cranium 14 from the Sima de los Huesos, Atapuerca, Spain

(2009) A. Gracia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Complete Neandertal Mitochondrial Genome Sequence Determined by High-Throughput Sequencing

(2008) Richard E. Green et al.   CELL

National Academy of Clinical Biochemistry Laboratory Medicine Practice Guidelines for Use of Tumor Markers in Testicular, Prostate, Colorectal, Breast, and Ovarian Cancers

(2008) C. M. Sturgeon et al.   CLINICAL CHEMISTRY

Proportionally more deleterious genetic variation in European than in African populations

(2008) Kirk E. Lohmueller et al.   NATURE

Genotype, haplotype and copy-number variation in worldwide human populations

(2008) Mattias Jakobsson et al.   NATURE

Evidence for declines in human population densities during the early Upper Paleolithic in western Europe

(2008) E. Morin   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA