Transferring functional annotations of membrane transporters on the basis of sequence similarity and sequence motifs

Assessing the relationship between conservation of function and conservation of sequence using photosynthetic proteins

(2012) Shaul Ashkenazi et al.   BIOINFORMATICS

Functional classification of membrane transporters and channels based on filtered TM/non-TM amino acid composition

(2012) N. S. Schaadt et al.   BIOPOLYMERS

Parameters for accurate genome alignment

(2012) Martin C Frith et al.   BMC BIOINFORMATICS

Saccharomyces Genome Database: the genomics resource of budding yeast

(2011) J. M. Cherry et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

A Study of the Evolution of Inverted-Topology Repeats from LeuT-Fold Transporters Using AlignMe

(2010) Kamil Khafizov et al.   BIOCHEMISTRY

Classifying Substrate Specificities of Membrane Transporters fromArabidopsis thaliana

(2010) Nadine S. Schaadt et al.   Journal of Chemical Information and Modeling

TransportTP: A two-phase classification approach for membrane transporter prediction and characterization

(2009) Haiquan Li et al.   BMC BIOINFORMATICS

A nearest neighbor approach for automated transporter prediction and categorization from protein sequences

(2008) H. Li et al.   BIOINFORMATICS

Functional discrimination of membrane proteins using machine learning techniques

(2008) M Michael Gromiha et al.   BMC BIOINFORMATICS

The Transporter Classification Database: recent advances

(2008) M. H. Saier et al.   NUCLEIC ACIDS RESEARCH

Discovering Sequence Motifs with Arbitrary Insertions and Deletions

(2008) Martin C. Frith et al.   PLoS Computational Biology