标题
Software platforms to facilitate reconstructing genome-scale metabolic networks
作者
关键词
-
出版物
ENVIRONMENTAL MICROBIOLOGY
Volume 16, Issue 1, Pages 49-59
出版商
Wiley
发表日期
2013-10-23
DOI
10.1111/1462-2920.12312
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling
- (2013) Tobias Österlund et al. BMC Systems Biology
- Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli
- (2013) D. McCloskey et al. Molecular Systems Biology
- A community-driven global reconstruction of human metabolism
- (2013) Ines Thiele et al. NATURE BIOTECHNOLOGY
- Version 6 of the consensus yeast metabolic network refines biochemical coverage and improves model performance
- (2013) Benjamin D. Heavner et al. Database-The Journal of Biological Databases and Curation
- Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM
- (2013) Jonathan M. Dreyfuss et al. PLoS Computational Biology
- Consistent Estimation of Gibbs Energy Using Component Contributions
- (2013) Elad Noor et al. PLoS Computational Biology
- The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum
- (2013) Rasmus Agren et al. PLoS Computational Biology
- Construction and completion of flux balance models from pathway databases
- (2012) Mario Latendresse et al. BIOINFORMATICS
- The design of long-term effective uranium bioremediation strategy using a community metabolic model
- (2012) K. Zhuang et al. BIOTECHNOLOGY AND BIOENGINEERING
- MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases
- (2012) Akhil Kumar et al. BMC BIOINFORMATICS
- Software applications for flux balance analysis
- (2012) M. Lakshmanan et al. BRIEFINGS IN BIOINFORMATICS
- Computational tools for metabolic engineering
- (2012) Wilbert B. Copeland et al. METABOLIC ENGINEERING
- Mathematical optimization applications in metabolic networks
- (2012) Ali R. Zomorrodi et al. METABOLIC ENGINEERING
- A metabolic network approach for the identification and prioritization of antimicrobial drug targets
- (2012) Arvind K. Chavali et al. TRENDS IN MICROBIOLOGY
- Shrinking the Metabolic Solution Space Using Experimental Datasets
- (2012) Jennifer L. Reed PLoS Computational Biology
- Integration of expression data in genome-scale metabolic network reconstructions
- (2012) Anna S. Blazier et al. Frontiers in Physiology
- Elimination of Thermodynamically Infeasible Loops in Steady-State Metabolic Models
- (2011) Jan Schellenberger et al. BIOPHYSICAL JOURNAL
- Fifteen years of large scale metabolic modeling of yeast: Developments and impacts
- (2011) Tobias Österlund et al. BIOTECHNOLOGY ADVANCES
- Metabolic modeling of endosymbiont genome reduction on a temporal scale
- (2011) K. Yizhak et al. Molecular Systems Biology
- A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011
- (2011) J. D. Orth et al. Molecular Systems Biology
- Integrative genome-scale metabolic analysis of Vibrio vulnificus for drug targeting and discovery
- (2011) H. U. Kim et al. Molecular Systems Biology
- Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol
- (2011) Harry Yim et al. Nature Chemical Biology
- Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0
- (2011) Jan Schellenberger et al. Nature Protocols
- Systems-biology approaches for predicting genomic evolution
- (2011) Balázs Papp et al. NATURE REVIEWS GENETICS
- KEGG for integration and interpretation of large-scale molecular data sets
- (2011) M. Kanehisa et al. NUCLEIC ACIDS RESEARCH
- Competitive and cooperative metabolic interactions in bacterial communities
- (2011) Shiri Freilich et al. Nature Communications
- Cytoscape 2.8: new features for data integration and network visualization
- (2010) M. E. Smoot et al. BIOINFORMATICS
- Compartmentalization of the Edinburgh Human Metabolic Network
- (2010) Tong Hao et al. BMC BIOINFORMATICS
- BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
- (2010) Jan Schellenberger et al. BMC BIOINFORMATICS
- OptFlux: an open-source software platform for in silico metabolic engineering
- (2010) Isabel Rocha et al. BMC Systems Biology
- The biomass objective function
- (2010) Adam M Feist et al. CURRENT OPINION IN MICROBIOLOGY
- High-throughput generation, optimization and analysis of genome-scale metabolic models
- (2010) Christopher S Henry et al. NATURE BIOTECHNOLOGY
- The BioPAX community standard for pathway data sharing
- (2010) Emek Demir et al. NATURE BIOTECHNOLOGY
- What is flux balance analysis?
- (2010) Jeffrey D Orth et al. NATURE BIOTECHNOLOGY
- A protocol for generating a high-quality genome-scale metabolic reconstruction
- (2010) Ines Thiele et al. Nature Protocols
- In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling
- (2010) Radhakrishnan Mahadevan et al. NATURE REVIEWS MICROBIOLOGY
- BioMet Toolbox: genome-wide analysis of metabolism
- (2010) M. Cvijovic et al. NUCLEIC ACIDS RESEARCH
- An Automated Phenotype-Driven Approach (GeneForce) for Refining Metabolic and Regulatory Models
- (2010) Dipak Barua et al. PLoS Computational Biology
- Quantitative assignment of reaction directionality in constraint-based models of metabolism: Application to Escherichia coli
- (2009) R.M.T. Fleming et al. BIOPHYSICAL CHEMISTRY
- Flux balance analysis of biological systems: applications and challenges
- (2009) K. Raman et al. BRIEFINGS IN BIOINFORMATICS
- Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
- (2009) P. D. Karp et al. BRIEFINGS IN BIOINFORMATICS
- Applications of genome-scale metabolic reconstructions
- (2009) Matthew A Oberhardt et al. Molecular Systems Biology
- The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
- (2009) Ron Caspi et al. NUCLEIC ACIDS RESEARCH
- GrowMatch: An Automated Method for Reconciling In Silico/In Vivo Growth Predictions
- (2009) Vinay Satish Kumar et al. PLoS Computational Biology
- The RAST Server: Rapid Annotations using Subsystems Technology
- (2008) Ramy K Aziz et al. BMC GENOMICS
- A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology
- (2008) Markus J Herrgård et al. NATURE BIOTECHNOLOGY
- Towards environmental systems biology of Shewanella
- (2008) James K. Fredrickson et al. NATURE REVIEWS MICROBIOLOGY
- Reconstruction of biochemical networks in microorganisms
- (2008) Adam M. Feist et al. NATURE REVIEWS MICROBIOLOGY
- CellDesigner 3.5: A Versatile Modeling Tool for Biochemical Networks
- (2008) A. Funahashi et al. PROCEEDINGS OF THE IEEE
- A survey of visualization tools for biological network analysis
- (2008) Georgios A Pavlopoulos et al. BioData Mining
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now