标题
Transposable elements as essential elements in the control of gene expression
作者
关键词
-
出版物
Mobile DNA
Volume 14, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2023-08-18
DOI
10.1186/s13100-023-00297-3
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Transposable Elements Co-Option in Genome Evolution and Gene Regulation
- (2023) Erica Gasparotto et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- A novel active transposon creates allelic variation through altered translation rate to influence protein abundance
- (2023) Guo Chen et al. NUCLEIC ACIDS RESEARCH
- Widespread contribution of transposable elements to the rewiring of mammalian 3D genomes
- (2023) Mayank N. K. Choudhary et al. Nature Communications
- ZFP92, a KRAB domain zinc finger protein enriched in pancreatic islets, binds to B1/Alu SINE transposable elements and regulates retroelements and genes
- (2023) Anna B. Osipovich et al. PLoS Genetics
- The MOV10 RNA helicase is a dosage-dependent host restriction factor for LINE1 retrotransposition in mice
- (2023) Yongjuan Guan et al. PLoS Genetics
- Mouse B2 SINE elements function as IFN-inducible enhancers
- (2023) Isabella Horton et al. eLife
- Expression of retrotransposons contributes to aging in Drosophila
- (2023) Blair K Schneider et al. GENETICS
- Expression of Transposable Elements in the Brain of the Drosophila melanogaster Model for Fragile X Syndrome
- (2023) Maria Dolores De Donno et al. Genes
- Deep Intronic LINE-1 Insertions in NF1: Expanding the Spectrum of Neurofibromatosis Type 1-Associated Rearrangements
- (2023) Viola Alesi et al. Biomolecules
- Maternal immune activation alters placental histone-3 lysine-9 tri-methylation, offspring sensorimotor processing, and hypothalamic transposable element expression in a sex-specific manner
- (2023) Holly DeRosa et al. Neurobiology of Stress
- Methylation of lysine 36 on histone H3 is required to control transposon activities in somatic cells
- (2023) Henrik Lindehell et al. Life Science Alliance
- Epigenomic analysis reveals prevalent contribution of transposable elements to cis-regulatory elements, tissue-specific expression, and alternative promoters in zebrafish
- (2022) Hyung Joo Lee et al. GENOME RESEARCH
- Roles of transposable elements in the regulation of mammalian transcription
- (2022) Raquel Fueyo et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- From telomere to telomere: The transcriptional and epigenetic state of human repeat elements
- (2022) Savannah J. Hoyt et al. SCIENCE
- Alternative Splicing in Cancer and Immune Cells
- (2022) Antoine Bernard et al. Cancers
- How Do Transposable Elements Activate Expression of Transcriptionally Silent Antibiotic Resistance Genes?
- (2022) Aleksander Lipszyc et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Role of Transposable Elements in Genome Stability: Implications for Health and Disease
- (2022) Audesh Bhat et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- L1 Retrotransposons: A Potential Endogenous Regulator for Schizophrenia
- (2022) Muhammad Jahangir et al. Frontiers in Genetics
- Integration of TE Induces Cancer Specific Alternative Splicing Events
- (2022) Woo Ryung Kim et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Retrotransposon insertions associated with risk of neurologic and psychiatric diseases
- (2022) Hyo Won Ahn et al. EMBO REPORTS
- B2 SINE Copies Serve as a Transposable Boundary of DNA Methylation and Histone Modifications in the Mouse
- (2021) Tomoko Ichiyanagi et al. MOLECULAR BIOLOGY AND EVOLUTION
- L1 retrotransposons exploit RNA m6A modification as an evolutionary driving force
- (2021) Sung-Yeon Hwang et al. Nature Communications
- Structural basis for piRNA targeting
- (2021) Todd A. Anzelon et al. NATURE
- Transposable elements that have recently been mobile in the human genome
- (2021) Matias I. Autio et al. BMC GENOMICS
- Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition
- (2020) Bernardo Rodriguez-Martin et al. NATURE GENETICS
- Transposable elements as a potent source of diverse cis -regulatory sequences in mammalian genomes
- (2020) Vasavi Sundaram et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- An open-label, phase II multicohort study of an oral hypomethylating agent CC-486 and durvalumab in advanced solid tumors
- (2020) Kirsty Taylor et al. Journal for ImmunoTherapy of Cancer
- A Field Guide to Eukaryotic Transposable Elements
- (2020) Jonathan N. Wells et al. Annual Review of Genetics
- Endogenous retroviruses drive species-specific germline transcriptomes in mammals
- (2020) Akihiko Sakashita et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Long non-coding RNAs and transposable elements: A functional relationship
- (2020) Victoire Fort et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH
- Transposable elements significantly contributed to the core promoters in the human genome
- (2019) Marten Kellner et al. Science China-Life Sciences
- Transposable elements drive widespread expression of oncogenes in human cancers
- (2019) Hyo Sik Jang et al. NATURE GENETICS
- The role of transposable elements and DNA damage repair mechanisms in gene duplications and gene fusions in plant genomes
- (2019) Ksenia V Krasileva CURRENT OPINION IN PLANT BIOLOGY
- Roles of Transposable Elements in the Different Layers of Gene Expression Regulation
- (2019) Denise Drongitis et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Transposable element expression in tumors is associated with immune infiltration and increased antigenicity
- (2019) Yu Kong et al. Nature Communications
- The epigenomic landscape of transposable elements across normal human development and anatomy
- (2019) Erica C. Pehrsson et al. Nature Communications
- Transposable elements generate regulatory novelty in a tissue-specific fashion
- (2018) Marco Trizzino et al. BMC GENOMICS
- The Neuronal Gene Arc Encodes a Repurposed Retrotransposon Gag Protein that Mediates Intercellular RNA Transfer
- (2018) Elissa D. Pastuzyn et al. CELL
- Long Interspersed Element-1 Methylation Level as a Prognostic Biomarker in Gastrointestinal Cancers
- (2018) Yoshifumi Baba et al. DIGESTION
- OUP accepted manuscript
- (2018) DNA RESEARCH
- Transposable elements shape the human proteome landscape via formation of cis -acting upstream open reading frames
- (2018) Shohei Kitano et al. GENES TO CELLS
- Bioinformatic analysis of regulation of natural antisense transcripts by transposable elements in human mRNA
- (2018) Jaeeun Jung et al. GENOMICS
- Evidence for convergent evolution of SINE-directed Staufen-mediated mRNA decay
- (2018) Bronwyn A. Lucas et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Arc protein: a flexible hub for synaptic plasticity and cognition
- (2018) Oleksii Nikolaienko et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Individual retrotransposon integrants are differentially controlled by KZFP/KAP1-dependent histone methylation, DNA methylation and TET-mediated hydroxymethylation in naïve embryonic stem cells
- (2018) Andrea Coluccio et al. Epigenetics & Chromatin
- Tau Activates Transposable Elements in Alzheimer’s Disease
- (2018) Caiwei Guo et al. Cell Reports
- Identification of Transposable Elements Contributing to Tissue-Specific Expression of Long Non-Coding RNAs
- (2018) Takafumi Chishima et al. Genes
- Profiling of Human Molecular Pathways Affected by Retrotransposons at the Level of Regulation by Transcription Factor Proteins
- (2018) Daniil Nikitin et al. Frontiers in Immunology
- The somatic mobilization of transposable element mariner-Mos1 during the Drosophila lifespan and its biological consequences
- (2018) Camila M. Pereira et al. GENE
- Nimble and Ready to Mingle: Transposon Outbursts of Early Development
- (2018) Diego Rodriguez-Terrones et al. TRENDS IN GENETICS
- Stress affects the epigenetic marks added by natural transposable element insertions in Drosophila melanogaster
- (2018) Lain Guio et al. Scientific Reports
- Human Endogenous Retroviruses Are Ancient Acquired Elements Still Shaping Innate Immune Responses
- (2018) Nicole Grandi et al. Frontiers in Immunology
- PIWI-interacting RNAs: small RNAs with big functions
- (2018) Deniz M. Ozata et al. NATURE REVIEWS GENETICS
- Transposable elements are the primary source of novelty in primate gene regulation
- (2017) Marco Trizzino et al. GENOME RESEARCH
- Transposable Elements in Human Cancer: Causes and Consequences of Deregulation
- (2017) Sumadi Anwar et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Transposable Element Exaptation into Regulatory Regions Is Rare, Influenced by Evolutionary Age, and Subject to Pleiotropic Constraints
- (2017) Corinne N. Simonti et al. MOLECULAR BIOLOGY AND EVOLUTION
- Overexpression of LINE-1 Retrotransposons in Autism Brain
- (2017) Svitlana Shpyleva et al. MOLECULAR NEUROBIOLOGY
- Selective silencing of euchromatic L1s revealed by genome-wide screens for L1 regulators
- (2017) Nian Liu et al. NATURE
- Integration site selection by retroviruses and transposable elements in eukaryotes
- (2017) Tania Sultana et al. NATURE REVIEWS GENETICS
- The functions and unique features of long intergenic non-coding RNA
- (2017) Julia D. Ransohoff et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Analysis of LINE-1 Elements in DNA from Postmortem Brains of Individuals with Schizophrenia
- (2017) Glenn A Doyle et al. NEUROPSYCHOPHARMACOLOGY
- Circular RNAs mediated by transposons are associated with transcriptomic and phenotypic variation in maize
- (2017) Lu Chen et al. NEW PHYTOLOGIST
- Human transposon insertion profiling: Analysis, visualization and identification of somatic LINE-1 insertions in ovarian cancer
- (2017) Zuojian Tang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The RNA modification landscape in human disease
- (2017) Nicky Jonkhout et al. RNA
- Translational repression by a miniature inverted-repeat transposable element in the 3′ untranslated region
- (2017) Jianqiang Shen et al. Nature Communications
- TRIM28 Controls a Gene Regulatory Network Based on Endogenous Retroviruses in Human Neural Progenitor Cells
- (2017) Per Ludvik Brattås et al. Cell Reports
- Pervasive epigenetic effects of Drosophila euchromatic transposable elements impact their evolution
- (2017) Yuh Chwen G Lee et al. eLife
- Transposable elements: Self-seekers of the germline, team-players of the soma
- (2016) David Haig BIOESSAYS
- Transposable Elements and Their KRAB-ZFP Controllers Regulate Gene Expression in Adult Tissues
- (2016) Gabriela Ecco et al. DEVELOPMENTAL CELL
- Somatically Acquired LINE-1 Insertions in Normal Esophagus Undergo Clonal Expansion in Esophageal Squamous Cell Carcinoma
- (2016) Tara T. Doucet-O'Hare et al. HUMAN MUTATION
- Argonaute: The executor of small RNA function
- (2016) Azali Azlan et al. Journal of Genetics and Genomics
- Epigenetics and cortical spreading depression: changes of DNA methylation level at retrotransposon sequences
- (2016) Denise Drongitis et al. MOLECULAR BIOLOGY REPORTS
- Piwi Modulates Chromatin Accessibility by Regulating Multiple Factors Including Histone H1 to Repress Transposons
- (2016) Yuka W. Iwasaki et al. MOLECULAR CELL
- Regulatory activities of transposable elements: from conflicts to benefits
- (2016) Edward B. Chuong et al. NATURE REVIEWS GENETICS
- Regulatory evolution of innate immunity through co-option of endogenous retroviruses
- (2016) E. B. Chuong et al. SCIENCE
- Massive contribution of transposable elements to mammalian regulatory sequences
- (2016) Nirmala Arul Rayan et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Chromatin variation associated with liver metabolism is mediated by transposable elements
- (2016) Juan Du et al. Epigenetics & Chromatin
- Antisense Oligonucleotides Modulating Activation of a Nonsense-Mediated RNA Decay Switch Exon in theATMGene
- (2016) Jana Kralovicova et al. Nucleic Acid Therapeutics
- Coordinately Co-opted Multiple Transposable Elements Constitute an Enhancer for wnt5a Expression in the Mammalian Secondary Palate
- (2016) Hidenori Nishihara et al. PLoS Genetics
- Upregulated LINE-1 Activity in the Fanconi Anemia Cancer Susceptibility Syndrome Leads to Spontaneous Pro-inflammatory Cytokine Production
- (2016) Christelle Brégnard et al. EBioMedicine
- RNA editing of non-coding RNA and its role in gene regulation
- (2015) Chammiran Daniel et al. BIOCHIMIE
- Alternative splicing and co-option of transposable elements: the case of TMPO/LAP2α and ZNF451 in mammals
- (2015) Federico Abascal et al. BIOINFORMATICS
- Ubiquitous L1 Mosaicism in Hippocampal Neurons
- (2015) Kyle R. Upton et al. CELL
- Dynamic Transcription of Distinct Classes of Endogenous Retroviral Elements Marks Specific Populations of Early Human Embryonic Cells
- (2015) Jonathan Göke et al. Cell Stem Cell
- DNA methylation restrains transposons from adopting a chromatin signature permissive for meiotic recombination
- (2015) Natasha Zamudio et al. GENES & DEVELOPMENT
- A global reference for human genetic variation
- (2015) Richard A. Gibbs et al. NATURE
- Retrotransposon insertions in the clonal evolution of pancreatic ductal adenocarcinoma
- (2015) Nemanja Rodić et al. NATURE MEDICINE
- Regulation of circRNA biogenesis
- (2015) Ling-Ling Chen et al. RNA Biology
- The domain structure and distribution of Alu elements in long noncoding RNAs and mRNAs
- (2015) Eugene Z. Kim et al. RNA
- Tissue-based map of the human proteome
- (2015) M. Uhlen et al. SCIENCE
- Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements
- (2015) David Secco et al. eLife
- The Role of Transposable Elements in the Origin and Evolution of MicroRNAs in Human
- (2015) Sheng Qin et al. PLoS One
- Frequent L1 retrotranspositions originating from TTC28 in colorectal cancer
- (2015) Esa Pitkänen et al. Oncotarget
- Complementary Sequence-Mediated Exon Circularization
- (2014) Xiao-Ou Zhang et al. CELL
- piRNA pathway targets active LINE1 elements to establish the repressive H3K9me3 mark in germ cells
- (2014) D. Pezic et al. GENES & DEVELOPMENT
- TE composition of human long noncoding RNAs and their expression patterns in human tissues
- (2014) Donghee Kang et al. Genes & Genomics
- Widespread contribution of transposable elements to the innovation of gene regulatory networks
- (2014) Vasavi Sundaram et al. GENOME RESEARCH
- Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance
- (2014) Alexandre Fort et al. NATURE GENETICS
- Increased L1 Retrotransposition in the Neuronal Genome in Schizophrenia
- (2014) Miki Bundo et al. NEURON
- Preconditioning provides neuroprotection in models of CNS disease: Paradigms and clinical significance
- (2014) R. Anne Stetler et al. PROGRESS IN NEUROBIOLOGY
- The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs
- (2014) R. Johnson et al. RNA
- Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes
- (2014) J. M. C. Tubio et al. SCIENCE
- Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications
- (2014) Aurélie Kapusta et al. TRENDS IN GENETICS
- Transposable elements in cancer as a by-product of stress-induced evolvability
- (2014) Tobias Mourier et al. Frontiers in Genetics
- A Retrotransposon-Driven Dicer Isoform Directs Endogenous Small Interfering RNA Production in Mouse Oocytes
- (2013) Matyas Flemr et al. CELL
- Piwi induces piRNA-guided transcriptional silencing and establishment of a repressive chromatin state
- (2013) A. Le Thomas et al. GENES & DEVELOPMENT
- Functional microRNAs and target sites are created by lineage-specific transposition
- (2013) Ryan M. Spengler et al. HUMAN MOLECULAR GENETICS
- The Intertwining of Transposable Elements and Non-Coding RNAs
- (2013) Michael Hadjiargyrou et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Exaptation of Transposable Elements into Novel Cis-Regulatory Elements: Is the Evidence Always Strong?
- (2013) F. S. J. de Souza et al. MOLECULAR BIOLOGY AND EVOLUTION
- On the classification of long non-coding RNAs
- (2013) Lina Ma et al. RNA Biology
- Transposable elements as genetic regulatory substrates in early development
- (2013) Wesley D. Gifford et al. TRENDS IN CELL BIOLOGY
- The Majority of Primate-Specific Regulatory Sequences Are Derived from Transposable Elements
- (2013) Pierre-Étienne Jacques et al. PLoS Genetics
- Transposable Elements Are Major Contributors to the Origin, Diversification, and Regulation of Vertebrate Long Noncoding RNAs
- (2013) Aurélie Kapusta et al. PLoS Genetics
- LINE-1 Retrotransposition in the Nervous System
- (2012) Charles A. Thomas et al. Annual Review of Cell and Developmental Biology
- Transposable Elements: An Abundant and Natural Source of Regulatory Sequences for Host Genes
- (2012) Rita Rebollo et al. Annual Review of Genetics
- TFIIIC bound DNA elements in nuclear organization and insulation
- (2012) Jacob G. Kirkland et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Cortical spreading depression differentially affects lysine methylation of H3 histone at neuroprotective genes and retrotransposon sequences
- (2012) Gina Rana et al. BRAIN RESEARCH
- 29 Mammalian Genomes Reveal Novel Exaptations of Mobile Elements for Likely Regulatory Functions in the Human Genome
- (2012) Craig B. Lowe et al. PLoS One
- Circular RNAs are abundant, conserved, and associated with ALU repeats
- (2012) W. R. Jeck et al. RNA
- Landscape of Somatic Retrotransposition in Human Cancers
- (2012) E. Lee et al. SCIENCE
- Modes of Retrotransposition of Long Interspersed Element-1 by Environmental Factors
- (2012) Yukihito Ishizaka et al. Frontiers in Microbiology
- Transposable elements reveal a stem cell-specific class of long noncoding RNAs
- (2012) David Kelley et al. GENOME BIOLOGY
- “Alu”strious long ncRNAs and their roles in shortening mRNA half-lives
- (2011) Chenguang Gong et al. CELL CYCLE
- Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
- (2011) M. N. Cabili et al. GENES & DEVELOPMENT
- lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3′ UTRs via Alu elements
- (2011) Chenguang Gong et al. NATURE
- Somatic retrotransposition alters the genetic landscape of the human brain
- (2011) J. Kenneth Baillie et al. NATURE
- Convergent evolution of two mammalian neuronal enhancers by sequential exaptation of unrelated retroposons
- (2011) L. F. Franchini et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Origin and evolution of a placental-specific microRNA family in the human genome
- (2010) Zhidong Yuan et al. BMC EVOLUTIONARY BIOLOGY
- Expanding the MicroRNA Targeting Code: Functional Sites with Centered Pairing
- (2010) Chanseok Shin et al. MOLECULAR CELL
- L1 retrotransposition in neurons is modulated by MeCP2
- (2010) Alysson R. Muotri et al. NATURE
- Derepression of an endogenous long terminal repeat activates the CSF1R proto-oncogene in human lymphoma
- (2010) Björn Lamprecht et al. NATURE MEDICINE
- A mobile threat to genome stability: The impact of non-LTR retrotransposons upon the human genome
- (2010) Miriam K. Konkel et al. SEMINARS IN CANCER BIOLOGY
- Deconstructing the Dogma
- (2009) John S. Mattick Annals of the New York Academy of Sciences
- Cellular Genes Derived from Gypsy/Ty3 Retrotransposons in Mammalian Genomes
- (2009) Jean-Nicolas Volff Annals of the New York Academy of Sciences
- Specialized piRNA Pathways Act in Germline and Somatic Tissues of the Drosophila Ovary
- (2009) Colin D. Malone et al. CELL
- Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression
- (2009) J. D. Hollister et al. GENOME RESEARCH
- L1 retrotransposition in human neural progenitor cells
- (2009) Nicole G. Coufal et al. NATURE
- Long non-coding RNAs: insights into functions
- (2009) Tim R. Mercer et al. NATURE REVIEWS GENETICS
- The impact of retrotransposons on human genome evolution
- (2009) Richard Cordaux et al. NATURE REVIEWS GENETICS
- LINE dancing in the human genome: transposable elements and disease
- (2009) Victoria P Belancio et al. Genome Medicine
- Serological Response to Human Endogenous Retrovirus K in Melanoma Patients Correlates with Survival Probability
- (2008) Silvia Hahn et al. AIDS RESEARCH AND HUMAN RETROVIRUSES
- Retroviral promoters in the human genome
- (2008) Andrew B. Conley et al. BIOINFORMATICS
- Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
- (2008) Lars Guelen et al. NATURE
- Transposable elements and the evolution of regulatory networks
- (2008) Cédric Feschotte NATURE REVIEWS GENETICS
- A Dual Origin of the Xist Gene from a Protein-Coding Gene and a Set of Transposable Elements
- (2008) Eugeny A. Elisaphenko et al. PLoS One
- Intronic Alus Influence Alternative Splicing
- (2008) Galit Lev-Maor et al. PLoS Genetics
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started