Transposable elements as a potent source of diverse cis -regulatory sequences in mammalian genomes
出版年份 2020 全文链接
标题
Transposable elements as a potent source of diverse
cis
-regulatory sequences in mammalian genomes
作者
关键词
-
出版物
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
Volume 375, Issue 1795, Pages 20190347
出版商
The Royal Society
发表日期
2020-02-10
DOI
10.1098/rstb.2019.0347
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens
- (2019) Molly Gasperini et al. CELL
- Transposable elements significantly contributed to the core promoters in the human genome
- (2019) Marten Kellner et al. Science China-Life Sciences
- Regulation of transposable elements by DNA modifications
- (2019) Özgen Deniz et al. NATURE REVIEWS GENETICS
- Hominoid-Specific Transposable Elements and KZFPs Facilitate Human Embryonic Genome Activation and Control Transcription in Naive Human ESCs
- (2019) Julien Pontis et al. Cell Stem Cell
- Author Correction: Transposable elements drive widespread expression of oncogenes in human cancers
- (2019) Hyo Sik Jang et al. NATURE GENETICS
- Functional evaluation of transposable elements as enhancers in mouse embryonic and trophoblast stem cells
- (2019) Christopher D Todd et al. eLife
- LINE-1 Evasion of Epigenetic Repression in Humans
- (2019) Francisco J. Sanchez-Luque et al. MOLECULAR CELL
- Activation of neuronal genes via LINE-1 elements upon global DNA demethylation in human neural progenitors
- (2019) Marie E Jönsson et al. Nature Communications
- Reorganization of 3D genome structure may contribute to gene regulatory evolution in primates
- (2019) Ittai E. Eres et al. PLoS Genetics
- Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells
- (2019) Yanxiao Zhang et al. NATURE GENETICS
- The epigenomic landscape of transposable elements across normal human development and anatomy
- (2019) Erica C. Pehrsson et al. Nature Communications
- Evolutionary Rewiring of Human Regulatory Networks by Waves of Genome Expansion
- (2018) Davide Marnetto et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Repeat associated mechanisms of genome evolution and function revealed by theMus caroliandMus paharigenomes
- (2018) David Thybert et al. GENOME RESEARCH
- The HUSH complex cooperates with TRIM28 to repress young retrotransposons and new genes
- (2018) Luisa Robbez-Masson et al. GENOME RESEARCH
- Dynamics of the epigenetic landscape during the maternal-to-zygotic transition
- (2018) Melanie A. Eckersley-Maslin et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Enhancer redundancy provides phenotypic robustness in mammalian development
- (2018) Marco Osterwalder et al. NATURE
- Systematic perturbation of retroviral LTRs reveals widespread long-range effects on human gene regulation
- (2018) Daniel R Fuentes et al. eLife
- Genome-wide quantification of the effects of DNA methylation on human gene regulation
- (2018) Amanda J Lea et al. eLife
- Transposable elements are the primary source of novelty in primate gene regulation
- (2017) Marco Trizzino et al. GENOME RESEARCH
- Transposable Element Exaptation into Regulatory Regions Is Rare, Influenced by Evolutionary Age, and Subject to Pleiotropic Constraints
- (2017) Corinne N. Simonti et al. MOLECULAR BIOLOGY AND EVOLUTION
- Selective silencing of euchromatic L1s revealed by genome-wide screens for L1 regulators
- (2017) Nian Liu et al. NATURE
- DNMT and HDAC inhibitors induce cryptic transcription start sites encoded in long terminal repeats
- (2017) David Brocks et al. NATURE GENETICS
- Conserved roles of mouse DUX and human DUX4 in activating cleavage-stage genes and MERVL/HERVL retrotransposons
- (2017) Peter G Hendrickson et al. NATURE GENETICS
- Ten principles of heterochromatin formation and function
- (2017) Robin C. Allshire et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Impact of cytosine methylation on DNA binding specificities of human transcription factors
- (2017) Yimeng Yin et al. SCIENCE
- The Role of KRAB-ZFPs in Transposable Element Repression and Mammalian Evolution
- (2017) Peng Yang et al. TRENDS IN GENETICS
- Functional cis-regulatory modules encoded by mouse-specific endogenous retrovirus
- (2017) Vasavi Sundaram et al. Nature Communications
- Complexity and conservation of regulatory landscapes underlie evolutionary resilience of mammalian gene expression
- (2017) Camille Berthelot et al. Nature Ecology & Evolution
- Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution
- (2016) Hannah K. Long et al. CELL
- Genetic dissection of the α-globin super-enhancer in vivo
- (2016) Deborah Hay et al. NATURE GENETICS
- Genome-wide mapping and analysis of chromosome architecture
- (2016) Anthony D. Schmitt et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Regulatory evolution of innate immunity through co-option of endogenous retroviruses
- (2016) E. B. Chuong et al. SCIENCE
- Endogenous retroviral promoter exaptation in human cancer
- (2016) Artem Babaian et al. Mobile DNA
- Enhancers, enhancers – from their discovery to today’s universe of transcription enhancers
- (2015) Walter Schaffner BIOLOGICAL CHEMISTRY
- Enhancer Divergence and cis-Regulatory Evolution in the Human and Chimp Neural Crest
- (2015) Sara L. Prescott et al. CELL
- Enhancer Evolution across 20 Mammalian Species
- (2015) Diego Villar et al. CELL
- Architectural and Functional Commonalities between Enhancers and Promoters
- (2015) Tae-Kyung Kim et al. CELL
- Unwind and transcribe: chromatin reprogramming in the early mammalian embryo
- (2015) Steffen Biechele et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells
- (2015) Edward J. Grow et al. NATURE
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- Ancient Transposable Elements Transformed the Uterine Regulatory Landscape and Transcriptome during the Evolution of Mammalian Pregnancy
- (2015) Vincent J. Lynch et al. Cell Reports
- Comparative Hi-C Reveals that CTCF Underlies Evolution of Chromosomal Domain Architecture
- (2015) Matteo Vietri Rudan et al. Cell Reports
- Pluripotency in the light of the developmental hourglass
- (2014) Ewart Kuijk et al. BIOLOGICAL REVIEWS
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- Widespread contribution of transposable elements to the innovation of gene regulatory networks
- (2014) Vasavi Sundaram et al. GENOME RESEARCH
- High-throughput functional testing of ENCODE segmentation predictions
- (2014) Jamie C. Kwasnieski et al. GENOME RESEARCH
- A comparative encyclopedia of DNA elements in the mouse genome
- (2014) Feng Yue et al. NATURE
- Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells
- (2014) Jichang Wang et al. NATURE
- Dynamic regulation of human endogenous retroviruses mediates factor-induced reprogramming and differentiation potential
- (2014) M. Ohnuki et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape
- (2013) Mingchao Xie et al. NATURE GENETICS
- Endogenous retroviruses function as species-specific enhancer elements in the placenta
- (2013) Edward B Chuong et al. NATURE GENETICS
- Captured retroviral envelope syncytin gene associated with the unique placental structure of higher ruminants
- (2013) Guillaume Cornelis et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Majority of Primate-Specific Regulatory Sequences Are Derived from Transposable Elements
- (2013) Pierre-Étienne Jacques et al. PLoS Genetics
- Transposable element recruitments in the mammalian placenta: impacts and mechanisms
- (2012) D. Emera et al. Briefings in Functional Genomics
- Waves of Retrotransposon Expansion Remodel Genome Organization and CTCF Binding in Multiple Mammalian Lineages
- (2012) Dominic Schmidt et al. CELL
- Embryonic stem cell potency fluctuates with endogenous retrovirus activity
- (2012) Todd S. Macfarlan et al. NATURE
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Architecture of the human regulatory network derived from ENCODE data
- (2012) Mark B. Gerstein et al. NATURE
- From ancestral infectious retroviruses to bona fide cellular genes: Role of the captured syncytins in placentation
- (2012) A. Dupressoir et al. PLACENTA
- HERV-H RNA is abundant in human embryonic stem cells and a precise marker for pluripotency
- (2012) Federico A Santoni et al. Retrovirology
- Enhancers as information integration hubs in development: lessons from genomics
- (2012) Christa Buecker et al. TRENDS IN GENETICS
- Epigenetic interplay between mouse endogenous retroviruses and host genes
- (2012) Rita Rebollo et al. GENOME BIOLOGY
- Epigenetic regulation of transposable element derived human gene promoters
- (2011) Ahsan Huda et al. GENE
- Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals
- (2011) Vincent J Lynch et al. NATURE GENETICS
- Histone H3 lysine 9 trimethylation and HP1γ favor inclusion of alternative exons
- (2011) Violaine Saint-André et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis
- (2011) Naoki Irie et al. Nature Communications
- Retrotransposon-Induced Heterochromatin Spreading in the Mouse Revealed by Insertional Polymorphisms
- (2011) Rita Rebollo et al. PLoS Genetics
- Repetitive Elements May Comprise Over Two-Thirds of the Human Genome
- (2011) A. P. Jason de Koning et al. PLoS Genetics
- Gene expression divergence recapitulates the developmental hourglass model
- (2010) Alex T. Kalinka et al. NATURE
- Transposable elements have rewired the core regulatory network of human embryonic stem cells
- (2010) Galih Kunarso et al. NATURE GENETICS
- MER41 Repeat Sequences Contain Inducible STAT1 Binding Sites
- (2010) Christoph D. Schmid et al. PLoS One
- KRAB–Zinc Finger Proteins and KAP1 Can Mediate Long-Range Transcriptional Repression through Heterochromatin Spreading
- (2010) Anna C. Groner et al. PLoS Genetics
- Transposable elements in gene regulation and in the evolution of vertebrate genomes
- (2009) Guillaume Bourque CURRENT OPINION IN GENETICS & DEVELOPMENT
- Endogenous retroviral LTRs as promoters for human genes: A critical assessment
- (2009) Carla J. Cohen et al. GENE
- The regulated retrotransposon transcriptome of mammalian cells
- (2009) Geoffrey J Faulkner et al. NATURE GENETICS
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
- Retroviral promoters in the human genome
- (2008) Andrew B. Conley et al. BIOINFORMATICS
- Evolution of the mammalian transcription factor binding repertoire via transposable elements
- (2008) G. Bourque et al. GENOME RESEARCH
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