From telomere to telomere: The transcriptional and epigenetic state of human repeat elements
出版年份 2022 全文链接
标题
From telomere to telomere: The transcriptional and epigenetic state of human repeat elements
作者
关键词
-
出版物
SCIENCE
Volume 376, Issue 6588, Pages -
出版商
American Association for the Advancement of Science (AAAS)
发表日期
2022-04-01
DOI
10.1126/science.abk3112
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- StainedGlass: interactive visualization of massive tandem repeat structures with identity heatmaps
- (2022) Mitchell R Vollger et al. BIOINFORMATICS
- Complete genomic and epigenetic maps of human centromeres
- (2022) Nicolas Altemose et al. SCIENCE
- Epigenetic patterns in a complete human genome
- (2022) Ariel Gershman et al. SCIENCE
- The complete sequence of a human genome
- (2022) Sergey Nurk et al. SCIENCE
- Segmental duplications and their variation in a complete human genome
- (2022) Mitchell R. Vollger et al. SCIENCE
- The Dfam community resource of transposable element families, sequence models, and genome annotations
- (2021) Jessica Storer et al. Mobile DNA
- Transposable element subfamily annotation has a reproducibility problem
- (2021) Kaitlin M. Carey et al. Mobile DNA
- Haplotype-resolved diverse human genomes and integrated analysis of structural variation
- (2021) Peter Ebert et al. SCIENCE
- Comparative analyses of gibbon centromeres reveal dynamic genus specific shifts in repeat composition
- (2021) Gabrielle A Hartley et al. MOLECULAR BIOLOGY AND EVOLUTION
- The structure, function and evolution of a complete human chromosome 8
- (2021) Glennis A. Logsdon et al. NATURE
- A common 1.6 mb Y-chromosomal inversion predisposes to subsequent deletions and severe spermatogenic failure in humans
- (2021) Pille Hallast et al. eLife
- Selection and thermostability suggest G-quadruplexes are novel functional elements of the human genome
- (2021) Wilfried M. Guiblet et al. GENOME RESEARCH
- Somatic Hypomethylation of Pericentromeric SST1 Repeats and Tetraploidization in Human Colorectal Cancer Cells
- (2021) Beatriz González et al. Cancers
- Molecular Evolutionary Genetics Analysis (MEGA) for macOS
- (2020) Glen Stecher et al. MOLECULAR BIOLOGY AND EVOLUTION
- An improved de novo genome assembly of the common marmoset genome yields improved contiguity and increased mapping rates of sequence data
- (2020) Vasanthan Jayakumar et al. BMC GENOMICS
- RepeatModeler2 for automated genomic discovery of transposable element families
- (2020) Jullien M. Flynn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The UCSC repeat browser allows discovery and visualization of evolutionary conflict across repeat families
- (2020) Jason D. Fernandes et al. Mobile DNA
- Telomere-to-telomere assembly of a complete human X chromosome
- (2020) Karen H. Miga et al. NATURE
- RNA contributions to the form and function of biomolecular condensates
- (2020) Christine Roden et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Loss of X Chromosome Inactivation in Androgenetic Complete Hydatidiform Moles With 46, XX Karyotype
- (2020) Xiaojing Chen et al. INTERNATIONAL JOURNAL OF GYNECOLOGICAL PATHOLOGY
- Chromatin regulatory dynamics of early human small intestinal development using a directed differentiation model
- (2020) Yu-Han Hung et al. NUCLEIC ACIDS RESEARCH
- G4Hunter web application: a web server for G-quadruplex prediction
- (2019) Václav Brázda et al. BIOINFORMATICS
- RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
- (2019) Alexey M Kozlov et al. BIOINFORMATICS
- Hominoid-Specific Transposable Elements and KZFPs Facilitate Human Embryonic Genome Activation and Control Transcription in Naive Human ESCs
- (2019) Julien Pontis et al. Cell Stem Cell
- The bipartite TAD organization of the X-inactivation center ensures opposing developmental regulation of Tsix and Xist
- (2019) Joke G. van Bemmel et al. NATURE GENETICS
- Independent amylase gene copy number bursts correlate with dietary preferences in mammals
- (2019) Petar Pajic et al. eLife
- Nascent RNA analyses: tracking transcription and its regulation
- (2019) Erin M. Wissink et al. NATURE REVIEWS GENETICS
- A high-quality genome assembly for the endangered golden snub-nosed monkey (Rhinopithecus roxellana)
- (2019) Lu Wang et al. GigaScience
- Long-read assembly of the Chinese rhesus macaque genome and identification of ape-specific structural variants
- (2019) Yaoxi He et al. Nature Communications
- FlexiDot: Highly customizable, ambiguity-aware dotplots for visual sequence analyses
- (2018) Kathrin M Seibt et al. BIOINFORMATICS
- Minimap2: pairwise alignment for nucleotide sequences
- (2018) Heng Li BIOINFORMATICS
- Transposable elements: genome innovation, chromosome diversity, and centromere conflict
- (2018) Savannah J. Klein et al. CHROMOSOME RESEARCH
- Centromere transcription allows CENP-A to transit from chromatin association to stable incorporation
- (2018) Georg O.M. Bobkov et al. JOURNAL OF CELL BIOLOGY
- MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
- (2018) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- A novel long non-coding RNA from NBL2 pericentromeric macrosatellite forms a perinucleolar aggregate structure in colon cancer
- (2018) Gabrijela Dumbović et al. NUCLEIC ACIDS RESEARCH
- Earth BioGenome Project: Sequencing life for the future of life
- (2018) Harris A. Lewin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- High-resolution comparative analysis of great ape genomes
- (2018) Zev N. Kronenberg et al. SCIENCE
- Shifting the limits in wheat research and breeding using a fully annotated reference genome
- (2018) et al. SCIENCE
- Ancient exapted transposable elements promote nuclear enrichment of human long noncoding RNAs
- (2018) Joana Carlevaro-Fita et al. GENOME RESEARCH
- Co-Opted Megasatellite DNA Drives Evolution of Secondary Night Vision in Azara's Owl Monkey
- (2017) Akihiko Koga et al. Genome Biology and Evolution
- The Mobile Element Locator Tool (MELT): population-scale mobile element discovery and biology
- (2017) Eugene J. Gardner et al. GENOME RESEARCH
- Truncated ORF1 proteins can suppress LINE-1 retrotransposition in trans
- (2017) Mark Sokolowski et al. NUCLEIC ACIDS RESEARCH
- ALU ternative Regulation for Gene Expression
- (2017) Ling-Ling Chen et al. TRENDS IN CELL BIOLOGY
- RNA-dependent stabilization of SUV39H1 at constitutive heterochromatin
- (2017) Whitney L Johnson et al. eLife
- Detection of subclonal L1 transductions in colorectal cancer by long-distance inverse-PCR and Nanopore sequencing
- (2017) Barun Pradhan et al. Scientific Reports
- Next-generation sequencing-based detection of germline L1-mediated transductions
- (2016) Jelena Tica et al. BMC GENOMICS
- Long Terminal Repeats: From Parasitic Elements to Building Blocks of the Transcriptional Regulatory Repertoire
- (2016) Peter J. Thompson et al. MOLECULAR CELL
- Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq)
- (2016) Dig Bijay Mahat et al. Nature Protocols
- Regulatory activities of transposable elements: from conflicts to benefits
- (2016) Edward B. Chuong et al. NATURE REVIEWS GENETICS
- deepTools2: a next generation web server for deep-sequencing data analysis
- (2016) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- Viruses and mobile elements as drivers of evolutionary transitions
- (2016) Eugene V. Koonin PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Long-read sequence assembly of the gorilla genome
- (2016) D. Gordon et al. SCIENCE
- Roles for retrotransposon insertions in human disease
- (2016) Dustin C. Hancks et al. Mobile DNA
- Establishment of Centromeric Chromatin by the CENP-A Assembly Factor CAL1 Requires FACT-Mediated Transcription
- (2015) Chin-Chi Chen et al. DEVELOPMENTAL CELL
- A survey of transposable element classification systems – A call for a fundamental update to meet the challenge of their diversity and complexity
- (2015) Benoît Piégu et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- The Dfam database of repetitive DNA families
- (2015) Robert Hubley et al. NUCLEIC ACIDS RESEARCH
- Sequence Features and Transcriptional Stalling within Centromere DNA Promote Establishment of CENP-A Chromatin
- (2015) Sandra Catania et al. PLoS Genetics
- High variability of genomic instability and gene expression profiling in different HeLa clones
- (2015) Annalisa Frattini et al. Scientific Reports
- Repetitive centromeric satellite RNA is essential for kinetochore formation and cell division
- (2014) Silvana Rošić et al. JOURNAL OF CELL BIOLOGY
- Resolving the complexity of the human genome using single-molecule sequencing
- (2014) Mark J. P. Chaisson et al. NATURE
- Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes
- (2014) J. M. C. Tubio et al. SCIENCE
- Hypermorphic expression of centromeric retroelement-encoded small RNAs impairs CENP-A loading
- (2013) Dawn M. Carone et al. CHROMOSOME RESEARCH
- Precise Maps of RNA Polymerase Reveal How Promoters Direct Initiation and Pausing
- (2013) H. Kwak et al. SCIENCE
- Spatial partitioning of the regulatory landscape of the X-inactivation centre
- (2012) Elphège P. Nora et al. NATURE
- jModelTest 2: more models, new heuristics and parallel computing
- (2012) Diego Darriba et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Dfam: a database of repetitive DNA based on profile hidden Markov models
- (2012) Travis J. Wheeler et al. NUCLEIC ACIDS RESEARCH
- LINE-1 Elements in Structural Variation and Disease
- (2011) Christine R. Beck et al. Annual Review of Genomics and Human Genetics
- Retrotransposition of marked SVA elements by human L1s in cultured cells
- (2011) Dustin C. Hancks et al. HUMAN MOLECULAR GENETICS
- The non-autonomous retrotransposon SVA is trans -mobilized by the human LINE-1 protein machinery
- (2011) Julija Raiz et al. NUCLEIC ACIDS RESEARCH
- Human Endogenous Retrovirus K106 (HERV-K106) Was Infectious after the Emergence of Anatomically Modern Humans
- (2011) Aashish R. Jha et al. PLoS One
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Expression, tandem repeat copy number variation and stability of four macrosatellite arrays in the human genome
- (2010) Deanna C Tremblay et al. BMC GENOMICS
- LINE-1 Activity in Facultative Heterochromatin Formation during X Chromosome Inactivation
- (2010) Jennifer C. Chow et al. CELL
- A Novel Correlation between LINE-1 Hypomethylation and the Malignancy of Gastrointestinal Stromal Tumors
- (2010) S. Igarashi et al. CLINICAL CANCER RESEARCH
- SVA retrotransposons: Evolution and genetic instability
- (2010) Dustin C. Hancks et al. SEMINARS IN CANCER BIOLOGY
- Mobile elements create structural variation: Analysis of a complete human genome
- (2009) J. Xing et al. GENOME RESEARCH
- 5'-Transducing SVA retrotransposon groups spread efficiently throughout the human genome
- (2009) A. Damert et al. GENOME RESEARCH
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
- Human DNA methylomes at base resolution show widespread epigenomic differences
- (2009) Ryan Lister et al. NATURE
- Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells
- (2009) Madeleine P Ball et al. NATURE BIOTECHNOLOGY
- Stabilization of quadruplex DNA perturbs telomere replication leading to the activation of an ATR-dependent ATM signaling pathway
- (2009) Angela Rizzo et al. NUCLEIC ACIDS RESEARCH
- LINE Retrotransposon RNA Is an Essential Structural and Functional Epigenetic Component of a Core Neocentromeric Chromatin
- (2009) Anderly C. Chueh et al. PLoS Genetics
- LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
- (2008) David Ellinghaus et al. BMC BIOINFORMATICS
- Analysis of the largest tandemly repeated DNA families in the human genome
- (2008) Peter E Warburton et al. BMC GENOMICS
- A universal classification of eukaryotic transposable elements implemented in Repbase
- (2008) Vladimir V. Kapitonov et al. NATURE REVIEWS GENETICS
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