Analysis of Pseudomonas aeruginosa Isolates from Patients with Cystic Fibrosis Revealed Novel Groups of Filamentous Bacteriophages

Mirusviruses link herpesviruses to giant viruses

(2023) Morgan Gaïa et al.   NATURE

Clonal diversity, antimicrobial resistance, and genome features among non-fermenting Gram-negative bacteria isolated from patients with cystic fibrosis in Russia

(2023) Yuliya Bocharova et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

How Three Self-Secreted Biofilm Exopolysaccharides of Pseudomonas aeruginosa, Psl, Pel, and Alginate, Can Each Be Exploited for Antibiotic Adjuvant Effects in Cystic Fibrosis Lung Infection

(2023) Jonathan Chung et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Clinical Phenotypes of Cystic Fibrosis Carriers

(2022) Philip M. Polgreen et al.   Annual Review of Medicine

Filamentous prophage capsid proteins contribute to superinfection exclusion and phage defence in Pseudomonas aeruginosa

(2022) Weiquan Wang et al.   ENVIRONMENTAL MICROBIOLOGY

Conformational Changes in Ff Phage Protein gVp upon Complexation with Its Viral Single-Stranded DNA Revealed Using Magic-Angle Spinning Solid-State NMR

(2022) Smadar Kedem et al.   Viruses-Basel

Filamentous Pseudomonas Phage Pf4 in the Context of Therapy-Inducibility, Infectivity, Lysogenic Conversion, and Potential Application

(2022) Damir Gavric et al.   Viruses-Basel

clinker & clustermap.js: automatic generation of gene cluster comparison figures

(2021) Cameron L M Gilchrist et al.   BIOINFORMATICS

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

(2021) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

A Roadmap for Genome-Based Phage Taxonomy

(2021) Dann Turner et al.   Viruses-Basel

Pseudomonas Phage MD8: Genetic Mosaicism and Challenges of Taxonomic Classification of Lambdoid Bacteriophages

(2021) Peter Evseev et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Multiple novel filamentous phages detected in the cloacal swab samples of birds using viral metagenomics approach

(2021) Jian Zeng et al.   Virology Journal

Pf Bacteriophage and Their Impact on Pseudomonas Virulence, Mammalian Immunity, and Chronic Infections

(2020) Patrick R. Secor et al.   Frontiers in Immunology

Two lineages of Pseudomonas aeruginosa filamentous phages – structural uniformity over integration preferences

(2020) Krzysztof Fiedoruk et al.   Genome Biology and Evolution

Filamentous phages: masters of a microbial sharing economy

(2019) Iain D Hay et al.   EMBO REPORTS

Filamentous bacteriophages are associated with chronic Pseudomonas lung infections and antibiotic resistance in cystic fibrosis

(2019) Elizabeth B. Burgener et al.   Science Translational Medicine

MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies

(2019) Dongwan D. Kang et al.   PeerJ

HH-suite3 for fast remote homology detection and deep protein annotation

(2019) Martin Steinegger et al.   BMC BIOINFORMATICS

Arming Filamentous Bacteriophage, a Nature-Made Nanoparticle, for New Vaccine and Immunotherapeutic Strategies

(2019) Rossella Sartorius et al.   Pharmaceutics

A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core

(2018) Lukas Zimmermann et al.   JOURNAL OF MOLECULAR BIOLOGY

Ancestrality and Mosaicism of Giant Viruses Supporting the Definition of the Fourth TRUC of Microbes

(2018) Philippe Colson et al.   Frontiers in Microbiology

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Enhanced annotations and features for comparing thousands ofPseudomonasgenomes in the Pseudomonas genome database

(2015) Geoffrey L. Winsor et al.   NUCLEIC ACIDS RESEARCH

Prevalence of Pf1-like (pro)phage genetic elements among Pseudomonas aeruginosa isolates

(2015) Petar Knezevic et al.   VIROLOGY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Profile Hidden Markov Models for the Detection of Viruses within Metagenomic Sequence Data

(2014) Peter Skewes-Cox et al.   PLoS One

Polyelectrolyte properties of filamentous biopolymers and their consequences in biological fluids

(2014) Paul A. Janmey et al.   Soft Matter

Differential infection properties of three inducible prophages from an epidemic strain of Pseudomonas aeruginosa

(2012) Chloe E James et al.   BMC MICROBIOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Bacteriophage genomics

(2008) Graham F Hatfull   CURRENT OPINION IN MICROBIOLOGY

Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa

(2008) C. Winstanley et al.   GENOME RESEARCH

The biofilm life cycle and virulence of Pseudomonas aeruginosa are dependent on a filamentous prophage

(2008) Scott A Rice et al.   ISME Journal