标题
A Roadmap for Genome-Based Phage Taxonomy
作者
关键词
-
出版物
Viruses-Basel
Volume 13, Issue 3, Pages 506
出版商
MDPI AG
发表日期
2021-03-19
DOI
10.3390/v13030506
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- ICTV Virus Taxonomy Profile: Herelleviridae
- (2020) Jakub Barylski et al. JOURNAL OF GENERAL VIROLOGY
- Global Organization and Proposed Megataxonomy of the Virus World
- (2020) Eugene V. Koonin et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Clades of huge phages from across Earth’s ecosystems
- (2020) Basem Al-Shayeb et al. NATURE
- Expansion of known ssRNA phage genomes: From tens to over a thousand
- (2020) J. Callanan et al. Science Advances
- Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee
- (2020) Evelien M. Adriaenssens et al. ARCHIVES OF VIROLOGY
- The new scope of virus taxonomy: partitioning the virosphere into 15 hierarchical ranks
- (2020) Nature Microbiology
- The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut
- (2020) Ann C. Gregory et al. Cell Host & Microbe
- ICTV Virus Taxonomy Profile: Finnlakeviridae
- (2020) Sari Mäntynen et al. JOURNAL OF GENERAL VIROLOGY
- From Orphan Phage to a Proposed New Family–The Diversity of N4-Like Viruses
- (2020) Johannes Wittmann et al. Antibiotics-Basel
- Megaphages infect Prevotella and variants are widespread in gut microbiomes
- (2019) Audra E. Devoto et al. Nature Microbiology
- Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
- (2019) Ho Bin Jang et al. NATURE BIOTECHNOLOGY
- Interactive Tree Of Life (iTOL) v4: recent updates and new developments
- (2019) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Phages
- (2019) Jakub Barylski et al. SYSTEMATIC BIOLOGY
- Evaluation of a concatenated protein phylogeny for classification of tailed double-stranded DNA viruses belonging to the order Caudovirales
- (2019) Soo Jen Low et al. Nature Microbiology
- Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes
- (2019) Simon Roux et al. Nature Microbiology
- Global phylogeography and ancient evolution of the widespread human gut virus crAssphage
- (2019) Robert A. Edwards et al. Nature Microbiology
- PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria
- (2019) Sion C Bayliss et al. GigaScience
- Defining a Core Genome for the Herpesvirales and Exploring their Evolutionary Relationship with the Caudovirales
- (2019) Juan S. Andrade-Martínez et al. Scientific Reports
- Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee
- (2018) Evelien M. Adriaenssens et al. ARCHIVES OF VIROLOGY
- Evaluation of the genomic diversity of viruses infecting bacteria, archaea and eukaryotes using a common bioinformatic platform: steps towards a unified taxonomy
- (2018) Pakorn Aiewsakun et al. JOURNAL OF GENERAL VIROLOGY
- The genomic underpinnings of eukaryotic virus taxonomy: creating a sequence-based framework for family-level virus classification
- (2018) Pakorn Aiewsakun et al. Microbiome
- A major lineage of non-tailed dsDNA viruses as unrecognized killers of marine bacteria
- (2018) Kathryn M. Kauffman et al. NATURE
- Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut
- (2018) Emma Guerin et al. Cell Host & Microbe
- Minimum Information about an Uncultivated Virus Genome (MIUViG)
- (2018) Simon Roux et al. NATURE BIOTECHNOLOGY
- UFBoot2: Improving the Ultrafast Bootstrap Approximation
- (2017) Diep Thi Hoang et al. MOLECULAR BIOLOGY AND EVOLUTION
- ModelFinder: fast model selection for accurate phylogenetic estimates
- (2017) Subha Kalyaanamoorthy et al. NATURE METHODS
- Virus found in a boreal lake links ssDNA and dsDNA viruses
- (2017) Elina Laanto et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria
- (2017) Benjamin Bolduc et al. PeerJ
- Taxonomy of prokaryotic viruses: update from the ICTV bacterial and archaeal viruses subcommittee
- (2016) Mart Krupovic et al. ARCHIVES OF VIROLOGY
- Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer
- (2016) Ann C. Gregory et al. BMC GENOMICS
- The Double-Stranded DNA Virosphere as a Modular Hierarchical Network of Gene Sharing
- (2016) Jaime Iranzo et al. mBio
- Hyperexpansion of RNA Bacteriophage Diversity
- (2016) Siddharth R. Krishnamurthy et al. PLOS BIOLOGY
- Roary: rapid large-scale prokaryote pan genome analysis
- (2015) Andrew J. Page et al. BIOINFORMATICS
- Integration of genomic and proteomic analyses in the classification of the Siphoviridae family
- (2015) Evelien M. Adriaenssens et al. VIROLOGY
- Diversity and comparative genomics of Microviridae in Sphagnum- dominated peatlands
- (2015) Achim Quaiser et al. Frontiers in Microbiology
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
- (2014) Bas E. Dutilh et al. Nature Communications
- GET_HOMOLOGUES, a Versatile Software Package for Scalable and Robust Microbial Pangenome Analysis
- (2013) Bruno Contreras-Moreira et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- Evolution and Diversity of the Microviridae Viral Family through a Collection of 81 New Complete Genomes Assembled from Virome Reads
- (2012) Simon Roux et al. PLoS One
- Proteinortho: Detection of (Co-)orthologs in large-scale analysis
- (2011) Marcus Lechner et al. BMC BIOINFORMATICS
- InterPro in 2011: new developments in the family and domain prediction database
- (2011) S. Hunter et al. NUCLEIC ACIDS RESEARCH
- The Pfam protein families database
- (2011) M. Punta et al. NUCLEIC ACIDS RESEARCH
- HMMER web server: interactive sequence similarity searching
- (2011) R. D. Finn et al. NUCLEIC ACIDS RESEARCH
- Microviridae Goes Temperate: Microvirus-Related Proviruses Reside in the Genomes of Bacteroidetes
- (2011) Mart Krupovic et al. PLoS One
- Classification of Myoviridae bacteriophages using protein sequence similarity
- (2009) Rob Lavigne et al. BMC MICROBIOLOGY
- Reticulate Representation of Evolutionary and Functional Relationships between Phage Genomes
- (2008) G. Lima-Mendez et al. MOLECULAR BIOLOGY AND EVOLUTION
- Phylogeny.fr: robust phylogenetic analysis for the non-specialist
- (2008) A. Dereeper et al. NUCLEIC ACIDS RESEARCH
- CDD: specific functional annotation with the Conserved Domain Database
- (2008) A. Marchler-Bauer et al. NUCLEIC ACIDS RESEARCH
- Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools
- (2008) Rob Lavigne et al. RESEARCH IN MICROBIOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now