标题
HH-suite3 for fast remote homology detection and deep protein annotation
作者
关键词
Homology detection, Sequence search, Protein alignment, Algorithm, Profile HMM, SIMD, Functional annotation
出版物
BMC BIOINFORMATICS
Volume 20, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2019-09-14
DOI
10.1186/s12859-019-3019-7
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- The Pfam protein families database in 2019
- (2018) Sara El-Gebali et al. NUCLEIC ACIDS RESEARCH
- InterPro in 2019: improving coverage, classification and access to protein sequence annotations
- (2018) Alex L Mitchell et al. NUCLEIC ACIDS RESEARCH
- MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
- (2017) Martin Steinegger et al. NATURE BIOTECHNOLOGY
- New CRISPR–Cas systems from uncultivated microbes
- (2016) David Burstein et al. NATURE
- Uniclust databases of clustered and deeply annotated protein sequences and alignments
- (2016) Milot Mirdita et al. NUCLEIC ACIDS RESEARCH
- Using HHsearch to tackle proteins of unknown function: A pilot study with PH domains
- (2016) David R. Fidler et al. TRAFFIC
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information
- (2014) Marco Biasini et al. NUCLEIC ACIDS RESEARCH
- Tackling soil diversity with the assembly of large, complex metagenomes
- (2014) Adina Chuang Howe et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Discriminative modelling of context-specific amino acid substitution probabilities
- (2012) Christof Angermüller et al. BIOINFORMATICS
- The Protein-Folding Problem, 50 Years On
- (2012) K. A. Dill et al. SCIENCE
- Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
- (2011) Torbjørn Rognes BMC BIOINFORMATICS
- Protein sequence comparison and fold recognition: progress and good-practice benchmarking
- (2011) Johannes Söding et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Adaptive seeds tame genomic sequence comparison
- (2011) S. M. Kielbasa et al. GENOME RESEARCH
- HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
- (2011) Michael Remmert et al. NATURE METHODS
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Detection of distant evolutionary relationships between protein families using theory of sequence profile-profile comparison
- (2010) Mindaugas Margelevičius et al. BMC BIOINFORMATICS
- Comparison of sequence profiles. Strategies for structural predictions using sequence information
- (2010) Leszek Rychlewski et al. PROTEIN SCIENCE
- De novo identification of highly diverged protein repeats by probabilistic consistency
- (2008) A. Biegert et al. BIOINFORMATICS
- CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
- (2008) Svetlin A Manavski et al. BMC BIOINFORMATICS
- SP5: Improving Protein Fold Recognition by Using Torsion Angle Profiles and Profile-Based Gap Penalty Model
- (2008) Wei Zhang et al. PLoS One
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