Profile Hidden Markov Models for the Detection of Viruses within Metagenomic Sequence Data

PRICE: Software for the Targeted Assembly of Components of (Meta) Genomic Sequence Data

(2013) J. Graham Ruby et al.   G3-Genes Genomes Genetics

Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource

(2012) Thomas J Sharpton et al.   BMC BIOINFORMATICS

Next-generation sequencing technology in clinical virology

(2012) M.R. Capobianchi et al.   CLINICAL MICROBIOLOGY AND INFECTION

Application of next-generation sequencing technologies in virology

(2012) A. D. Radford et al.   JOURNAL OF GENERAL VIROLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Identification, Characterization, and In Vitro Culture of Highly Divergent Arenaviruses from Boa Constrictors and Annulated Tree Boas: Candidate Etiological Agents for Snake Inclusion Body Disease

(2012) M. D. Stenglein et al.   mBio

Virus Identification in Unknown Tropical Febrile Illness Cases Using Deep Sequencing

(2012) Nathan L. Yozwiak et al.   PLoS Neglected Tropical Diseases

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Temporal Analysis of the Honey Bee Microbiome Reveals Four Novel Viruses and Seasonal Prevalence of Known Viruses, Nosema, and Crithidia

(2011) Charles Runckel et al.   PLoS One

Mimivirus shows dramatic genome reduction after intraamoebal culture

(2011) M. Boyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Natural and Experimental Infection of Caenorhabditis Nematodes by Novel Viruses Related to Nodaviruses

(2011) Marie-Anne Félix et al.   PLOS BIOLOGY

Human Enterovirus 109: a Novel Interspecies Recombinant Enterovirus Isolated from a Case of Acute Pediatric Respiratory Illness in Nicaragua

(2010) N. L. Yozwiak et al.   JOURNAL OF VIROLOGY

Microbe Hunting

(2010) W. I. Lipkin   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The complete genome of klassevirus - a novel picornavirus in pediatric stool

(2009) Alexander L Greninger et al.   Virology Journal

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Emerging Pathogens: Challenges and Successes of Molecular Diagnostics

(2008) Jianli Dong et al.   JOURNAL OF MOLECULAR DIAGNOSTICS

Global trends in emerging infectious diseases

(2008) Kate E. Jones et al.   NATURE

NCBI Reference Sequences: current status, policy and new initiatives

(2008) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

Temporal trends in the discovery of human viruses

(2008) M. E.J Woolhouse et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Recovery of divergent avian bornaviruses from cases of proventricular dilatation disease: Identification of a candidate etiologic agent

(2008) Amy L Kistler et al.   Virology Journal