Seed color in lettuce is determined by the LsTT2, LsCHS, and Ls2OGD genes from the flavonoid biosynthesis pathway

Conjunctive Analyses of BSA-Seq and BSR-Seq to Identify Candidate Genes Controlling the Black Lemma and Pericarp Trait in Barley

(2023) Yajie Liu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genetic characterization of hull color using BSR-Seq and genome re-sequencing approaches in foxtail millet

(2022) Bohong Tian et al.   Frontiers in Plant Science

Dormancy and dormancy release in white-grained wheat (Triticum aestivum L.)

(2021) Daryl J. Mares et al.   PLANTA

Twelve years of SAMtools and BCFtools

(2021) Petr Danecek et al.   GigaScience

Effect of chilling acclimation on germination and seedlings response to cold in different seed coat colored wheat (Triticum aestivum L.)

(2021) Paulina Calderon Flores et al.   BMC PLANT BIOLOGY

Determination of total flavonoid content by aluminum chloride assay: A critical evaluation

(2021) Amjad M. Shraim et al.   LWT-FOOD SCIENCE AND TECHNOLOGY

Roles of the 2-Oxoglutarate-Dependent Dioxygenase Superfamily in the Flavonoid Pathway: A Review of the Functional Diversity of F3H, FNS I, FLS, and LDOX/ANS

(2021) Yueyue Wang et al.   MOLECULES

Distinct Metabolome Changes during Seed Germination of Lettuce (Lactuca sativa L.) in Response to Thermal Stress as Revealed by Untargeted Metabolomics Analysis

(2020) Shiwei Wei et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Molecular determinants of Release Factor 2 for ArfA-mediated ribosome rescue

(2020) Daisuke Kurita et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

New insights into no-go, non-stop and nonsense-mediated mRNA decay complexes

(2020) Kyle T Powers et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Review: Revealing the genetic mechanisms of pre-harvest sprouting in hexaploid wheat (Triticum aestivum L.)

(2019) Justin M. Vetch et al.   PLANT SCIENCE

Rr MYB 5‐ and Rr MYB 10‐regulated flavonoid biosynthesis plays a pivotal role in feedback loop responding to wounding and oxidation in Rosa rugosa

(2019) Yuxiao Shen et al.   PLANT BIOTECHNOLOGY JOURNAL

Characterization of four polymorphic genes controlling red leaf color in lettuce that have undergone disruptive selection since domestication

(2019) Wenqing Su et al.   PLANT BIOTECHNOLOGY JOURNAL

A comparative metabolomics study of flavonoids in sweet potato with different flesh colors ( Ipomoea batatas (L.) Lam)

(2018) Aimin Wang et al.   FOOD CHEMISTRY

The No-go decay system degrades plant mRNAs that contain a long A-stretch in the coding region

(2018) István Szádeczky-Kardoss et al.   PLANT SCIENCE

CRISPR-P 2.0: An Improved CRISPR-Cas9 Tool for Genome Editing in Plants

(2017) Hao Liu et al.   Molecular Plant

Poplar MYB115 and MYB134 Transcription Factors Regulate Proanthocyanidin Synthesis and Structure

(2017) Amy Midori James et al.   PLANT PHYSIOLOGY

RNA sequencing provides insights into the evolution of lettuce and the regulation of flavonoid biosynthesis

(2017) Lei Zhang et al.   Nature Communications

Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce

(2017) Sebastian Reyes-Chin-Wo et al.   Nature Communications

Bulked sample analysis in genetics, genomics and crop improvement

(2016) Cheng Zou et al.   PLANT BIOTECHNOLOGY JOURNAL

Rapid identification of lettuce seed germination mutants by bulked segregant analysis and whole genome sequencing

(2016) Heqiang Huo et al.   PLANT JOURNAL

MYB Transcription Factors as Regulators of Phenylpropanoid Metabolism in Plants

(2015) Jingying Liu et al.   Molecular Plant

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Transcriptional control of flavonoid biosynthesis by MYB–bHLH–WDR complexes

(2015) Wenjia Xu et al.   TRENDS IN PLANT SCIENCE

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

A CRISPR/Cas9 toolkit for multiplex genome editing in plants

(2014) Hui-Li Xing et al.   BMC PLANT BIOLOGY

Evolution and diversity of the 2-oxoglutarate-dependent dioxygenase superfamily in plants

(2014) Yosuke Kawai et al.   PLANT JOURNAL

Complexity and robustness of the flavonoid transcriptional regulatory network revealed by comprehensive analyses of MYB-bHLH-WDR complexes and their targets in Arabidopsis seed

(2013) Wenjia Xu et al.   NEW PHYTOLOGIST

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

(2013) Hiroki Takagi et al.   PLANT JOURNAL

GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data

(2012) Jianxing Feng et al.   BIOINFORMATICS

Proteobacterial ArfA Peptides Are Synthesized from Non-stop Messenger RNAs

(2012) Ryan E. Schaub et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Expression of the R2R3-MYB Transcription Factor TaMYB14 from Trifolium arvense Activates Proanthocyanidin Biosynthesis in the Legumes Trifolium repens and Medicago sativa

(2012) K. R. Hancock et al.   PLANT PHYSIOLOGY

Flavonoids: biosynthesis, biological functions, and biotechnological applications

(2012) María L. Falcone Ferreyra et al.   Frontiers in Plant Science

A bHLH transcription factor, DvIVS, is involved in regulation of anthocyanin synthesis in dahlia (Dahlia variabilis)

(2011) Sho Ohno et al.   JOURNAL OF EXPERIMENTAL BOTANY

Quantitative trait loci associated with longevity of lettuce seeds under conventional and controlled deterioration storage conditions

(2010) Andrés R. Schwember et al.   JOURNAL OF EXPERIMENTAL BOTANY

Variance component model to account for sample structure in genome-wide association studies

(2010) Hyun Min Kang et al.   NATURE GENETICS

A gene encoding an abscisic acid biosynthetic enzyme (LsNCED4) collocates with the high temperature germination locus Htg6.1 in lettuce (Lactuca sp.)

(2010) Jason Argyris et al.   THEORETICAL AND APPLIED GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

What recent ribosome structures have revealed about the mechanism of translation

(2009) T. Martin Schmeing et al.   NATURE

Peptide Release on the Ribosome: Mechanism and Implications for Translational Control

(2008) Elaine M. Youngman et al.   Annual Review of Microbiology

Quantitative trait loci associated with lettuce seed germination under different temperature and light environments

(2008) Eiji Hayashi et al.   GENOME