Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce
出版年份 2017 全文链接
标题
Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce
作者
关键词
-
出版物
Nature Communications
Volume 8, Issue -, Pages 14953
出版商
Springer Nature
发表日期
2017-04-12
DOI
10.1038/ncomms14953
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
- (2016) Nicholas H. Putnam et al. GENOME RESEARCH
- Genome evolution in the allotetraploid frog Xenopus laevis
- (2016) Adam M. Session et al. NATURE
- A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution
- (2016) Massimo Iorizzo et al. NATURE GENETICS
- The genome sequence of the outbreeding globe artichoke constructed de novo incorporating a phase-aware low-pass sequencing strategy of F1 progeny
- (2016) Davide Scaglione et al. Scientific Reports
- Progress, challenges and the future of crop genomes
- (2015) Todd P Michael et al. CURRENT OPINION IN PLANT BIOLOGY
- Contact genomics: scaffolding and phasing (meta)genomes using chromosome 3D physical signatures
- (2015) Jean-François Flot et al. FEBS LETTERS
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous–Paleogene boundary
- (2014) Kevin Vanneste et al. GENOME RESEARCH
- sPARTA: a parallelized pipeline for integrated analysis of plant miRNA and cleaved mRNA data sets, including new miRNA target-identification software
- (2014) Atul Kakrana et al. NUCLEIC ACIDS RESEARCH
- Rfam 12.0: updates to the RNA families database
- (2014) Eric P. Nawrocki et al. NUCLEIC ACIDS RESEARCH
- An Atlas of Soybean Small RNAs Identifies Phased siRNAs from Hundreds of Coding Genes
- (2014) Siwaret Arikit et al. PLANT CELL
- De Novo Genome Assembly of the Economically Important Weed Horseweed Using Integrated Data from Multiple Sequencing Platforms
- (2014) Y. Peng et al. PLANT PHYSIOLOGY
- Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization
- (2014) C. Qin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Infernal 1.1: 100-fold faster RNA homology searches
- (2013) E. P. Nawrocki et al. BIOINFORMATICS
- Rapid construction of parallel analysis of RNA end (PARE) libraries for Illumina sequencing
- (2013) Jixian Zhai et al. METHODS
- Architecture and evolution of a minute plant genome
- (2013) Enrique Ibarra-Laclette et al. NATURE
- Recent updates and developments to plant genome size databases
- (2013) Sònia Garcia et al. NUCLEIC ACIDS RESEARCH
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- MicroRNA Superfamilies Descended from miR390 and Their Roles in Secondary Small Interfering RNA Biogenesis in Eudicots
- (2013) Rui Xia et al. PLANT CELL
- Phased, Secondary, Small Interfering RNAs in Posttranscriptional Regulatory Networks
- (2013) Q. Fei et al. PLANT CELL
- Consequences of Normalizing Transcriptomic and Genomic Libraries of Plant Genomes Using a Duplex-Specific Nuclease and Tetramethylammonium Chloride
- (2013) Marta Matvienko et al. PLoS One
- Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.)
- (2012) Kevin Stoffel et al. BMC GENOMICS
- MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
- (2011) J. Zhai et al. GENES & DEVELOPMENT
- Ancestral polyploidy in seed plants and angiosperms
- (2011) Yuannian Jiao et al. NATURE
- The genome of the mesopolyploid crop species Brassica rapa
- (2011) Xiaowu Wang et al. NATURE GENETICS
- Eocene Patagonia Fossils of the Daisy Family
- (2010) V. D. Barreda et al. SCIENCE
- De novo assembly of human genomes with massively parallel short read sequencing
- (2009) R. Li et al. GENOME RESEARCH
- Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event
- (2009) J. A. Fawcett et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Crop domestication in the Compositae: a family-wide trait assessment
- (2008) Hannes Dempewolf et al. GENETIC RESOURCES AND CROP EVOLUTION
- Secondary metabolism and antioxidants are involved in environmental adaptation and stress tolerance in lettuce
- (2008) Myung-Min Oh et al. JOURNAL OF PLANT PHYSIOLOGY
- Multiple Paleopolyploidizations during the Evolution of the Compositae Reveal Parallel Patterns of Duplicate Gene Retention after Millions of Years
- (2008) M. S. Barker et al. MOLECULAR BIOLOGY AND EVOLUTION
- Positive Selection and Expression Divergence Following Gene Duplication in the Sunflower CYCLOIDEA Gene Family
- (2008) M. A. Chapman et al. MOLECULAR BIOLOGY AND EVOLUTION
- Efficient and Accurate Construction of Genetic Linkage Maps from the Minimum Spanning Tree of a Graph
- (2008) Yonghui Wu et al. PLoS Genetics
- The Value of Nonmodel Genomes and an Example Using SynMap Within CoGe to Dissect the Hexaploidy that Predates the Rosids
- (2008) Eric Lyons et al. Tropical Plant Biology
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More