标题
Soil microbiome engineering for sustainability in a changing environment
作者
关键词
-
出版物
NATURE BIOTECHNOLOGY
Volume -, Issue -, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2023-10-31
DOI
10.1038/s41587-023-01932-3
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Large language models generate functional protein sequences across diverse families
- (2023) Ali Madani et al. NATURE BIOTECHNOLOGY
- Synthesis on the effectiveness of soil translocation for plant community restoration
- (2023) Gijs M. Gerrits et al. JOURNAL OF APPLIED ECOLOGY
- De novo design of luciferases using deep learning
- (2023) Andy Hsien-Wei Yeh et al. NATURE
- High-throughput microbial culturomics using automation and machine learning
- (2023) Yiming Huang et al. NATURE BIOTECHNOLOGY
- High-throughput genetic engineering of nonmodel and undomesticated bacteria via iterative site-specific genome integration
- (2023) Joshua R. Elmore et al. Science Advances
- Genetically stable CRISPR-based kill switches for engineered microbes
- (2022) Austin G. Rottinghaus et al. Nature Communications
- Microbial Biocontainment Systems for Clinical, Agricultural, and Industrial Applications
- (2022) Aaron Pantoja Angles et al. Frontiers in Bioengineering and Biotechnology
- Clay chips and beads capture in situ barley root microbiota and facilitate in vitro long-term preservation of microbial strains
- (2022) Mohamed R Abdelfadil et al. FEMS MICROBIOLOGY ECOLOGY
- Engineered plant control of associative nitrogen fixation
- (2022) Timothy L. Haskett et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Soil carbon sequestration – An interplay between soil microbial community and soil organic matter dynamics
- (2022) Siddhartha Shankar Bhattacharyya et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Phosphite synthetic auxotrophy as an effective biocontainment strategy for the industrial chassis Pseudomonas putida
- (2022) Enrique Asin-Garcia et al. Microbial Cell Factories
- A Framework for the Systematic Selection of Biosensor Chassis for Environmental Synthetic Biology
- (2022) Swetha Sridhar et al. ACS Synthetic Biology
- Artificial Soils Reveal Individual Factor Controls on Microbial Processes
- (2022) Ilenne Del Valle et al. mSystems
- Plant-associated fungi support bacterial resilience following water limitation
- (2022) Rachel Hestrin et al. ISME Journal
- M-TUBE enables large-volume bacterial gene delivery using a high-throughput microfluidic electroporation platform
- (2022) Po-Hsun Huang et al. PLOS BIOLOGY
- Interaction Networks Are Driven by Community-Responsive Phenotypes in a Chitin-Degrading Consortium of Soil Microbes
- (2022) Ryan McClure et al. mSystems
- Computational design of CRISPR guide RNAs to enable strain-specific control of microbial consortia
- (2022) Austin G. Rottinghaus et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Functional assembly of root‐associated microbial consortia improves nutrient efficiency and yield in soybean
- (2021) Cunhu Wang et al. Journal of Integrative Plant Biology
- Interrogating Plant-Microbe Interactions with Chemical Tools: Click Chemistry Reagents for Metabolic Labeling and Activity-Based Probes
- (2021) Vivian S. Lin MOLECULES
- Increasing flavonoid concentrations in root exudates enhance associations between arbuscular mycorrhizal fungi and an invasive plant
- (2021) Baoliang Tian et al. ISME Journal
- Translating New Synthetic Biology Advances for Biosensing Into the Earth and Environmental Sciences
- (2021) Ilenne Del Valle et al. Frontiers in Microbiology
- Discovering multiple types of DNA methylation from bacteria and microbiome using nanopore sequencing
- (2021) Alan Tourancheau et al. NATURE METHODS
- Permafrost carbon feedbacks threaten global climate goals
- (2021) Susan M. Natali et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Specialized Plant Growth Chamber Designs to Study Complex Rhizosphere Interactions
- (2021) Mon Oo Yee et al. Frontiers in Microbiology
- Editorial: Salt Tolerant Rhizobacteria: For Better Productivity and Remediation of Saline Soils
- (2021) Naveen Kumar Arora et al. Frontiers in Microbiology
- Competition, Nodule Occupancy, and Persistence of Inoculant Strains: Key Factors in the Rhizobium-Legume Symbioses
- (2021) Marcela Mendoza-Suárez et al. Frontiers in Plant Science
- Visualizing the Hidden Half: Plant-Microbe Interactions in the Rhizosphere
- (2021) Pubudu P. Handakumbura et al. mSystems
- Plant biodiversity and the regeneration of soil fertility
- (2021) George N. Furey et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Enabling Biological Nitrogen Fixation for Cereal Crops in Fertilized Fields
- (2021) Amy Wen et al. ACS Synthetic Biology
- Modulating Drought Stress Response of Maize by a Synthetic Bacterial Community
- (2021) Jaderson Silveira Leite Armanhi et al. Frontiers in Microbiology
- Species- and site-specific genome editing in complex bacterial communities
- (2021) Benjamin E. Rubin et al. Nature Microbiology
- Rhizobium Inoculation Drives the Shifting of Rhizosphere Fungal Community in a Host Genotype Dependent Manner
- (2020) Hanyu Xu et al. Frontiers in Microbiology
- Influence of Substrate Concentration on the Culturability of Heterotrophic Soil Microbes Isolated by High-Throughput Dilution-to-Extinction Cultivation
- (2020) Ryan P. Bartelme et al. mSphere
- Soil organic matter attenuates the efficacy of flavonoid-based plant-microbe communication
- (2020) Ilenne Del Valle et al. Science Advances
- It takes three to tango: the importance of microbes, host plant and soil management to elucidate manipulation strategies for the plant microbiome
- (2020) Micaela Tosi et al. CANADIAN JOURNAL OF MICROBIOLOGY
- Bacillus licheniformis FMCH001 Increases Water Use Efficiency via Growth Stimulation in Both Normal and Drought Conditions
- (2020) Saqib Saleem Akhtar et al. Frontiers in Plant Science
- Soil Microbiomes Under Climate Change and Implications for Carbon Cycling
- (2020) Dan Naylor et al. Annual Review of Environment and Resources
- DRAM for distilling microbial metabolism to automate the curation of microbiome function
- (2020) Michael Shaffer et al. NUCLEIC ACIDS RESEARCH
- Deconstructing the Soil Microbiome into Reduced-Complexity Functional Modules
- (2020) Dan Naylor et al. mBio
- Trichoderma: The “Secrets” of a Multitalented Biocontrol Agent
- (2020) Monika Sood et al. Plants-Basel
- Disruption of Firmicutes and Actinobacteria abundance in tomato rhizosphere causes the incidence of bacterial wilt disease
- (2020) Sang-Moo Lee et al. ISME Journal
- Deliberate introduction of invisible invaders: A critical appraisal of the impact of microbial inoculants on soil microbial communities
- (2020) Panji Cahya Mawarda et al. SOIL BIOLOGY & BIOCHEMISTRY
- Development and Analysis of a Stable, Reduced Complexity Model Soil Microbiome
- (2020) Ryan McClure et al. Frontiers in Microbiology
- From Microbiome to Traits: Designing Synthetic Microbial Communities for Improved Crop Resiliency
- (2020) Rafael Soares Correa de Souza et al. Frontiers in Plant Science
- Investigating the impact of the mycorrhizal inoculum on the resident fungal community and on plant growth
- (2020) Maria M. Martignoni et al. ECOLOGICAL MODELLING
- Home sweet home – how mutualistic microbes modify root development to promote symbiosis
- (2020) Mina Ghahremani et al. JOURNAL OF EXPERIMENTAL BOTANY
- CRISPR RNA-guided integrases for high-efficiency, multiplexed bacterial genome engineering
- (2020) Phuc Leo H. Vo et al. NATURE BIOTECHNOLOGY
- Biological approaches practised using genetically engineered microbes for a sustainable environment: A review
- (2020) Gaurav Pant et al. JOURNAL OF HAZARDOUS MATERIALS
- Metagenomic engineering of the mammalian gut microbiome in situ
- (2019) Carlotta Ronda et al. NATURE METHODS
- Genotype and rhizobium inoculation modulate the assembly of soybean rhizobacterial communities
- (2019) Yongjia Zhong et al. PLANT CELL AND ENVIRONMENT
- Introducing THOR, a Model Microbiome for Genetic Dissection of Community Behavior
- (2019) Gabriel L. Lozano et al. mBio
- A versatile platform strain for high-fidelity multiplex genome editing
- (2019) Robert G Egbert et al. NUCLEIC ACIDS RESEARCH
- A critical review of the impacts of cover crops on nitrogen leaching, net greenhouse gas balance and crop productivity
- (2019) Mohamed Abdalla et al. GLOBAL CHANGE BIOLOGY
- Engineered root bacteria release plant-available phosphate from phytate
- (2019) Christine N. Shulse et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Monitoring of soil microbial inoculants and their impact on maize (Zea mays L.) rhizosphere using T-RFLP molecular fingerprint method
- (2019) András Kari et al. APPLIED SOIL ECOLOGY
- Rational development of transformation in Clostridium thermocellum ATCC 27405 via complete methylome analysis and evasion of native restriction–modification systems
- (2019) Lauren A. Riley et al. JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
- EcoFABs: advancing microbiome science through standardized fabricated ecosystems
- (2019) Karsten Zengler et al. NATURE METHODS
- Massively parallel screening of synthetic microbial communities
- (2019) Jared Kehe et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mitigation of environmental pollution by genetically engineered bacteria — Current challenges and future perspectives
- (2019) Lina Liu et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Engineering transkingdom signalling in plants to control gene expression in rhizosphere bacteria
- (2019) Barney A. Geddes et al. Nature Communications
- Metaphenomic Responses of a Native Prairie Soil Microbiome to Moisture Perturbations
- (2019) Taniya Roy Chowdhury et al. mSystems
- Experimental Microbiomes: Models Not to Scale
- (2019) Marc G. Chevrette et al. mSystems
- Multiplex transcriptional characterizations across diverse bacterial species using cell‐free systems
- (2019) Sung Sun Yim et al. Molecular Systems Biology
- Genome Sequences of a Plant Beneficial Synthetic Bacterial Community Reveal Genetic Features for Successful Plant Colonization
- (2019) Rafael Soares Correa de Souza et al. Frontiers in Microbiology
- Soil microbiomes and climate change
- (2019) Janet K. Jansson et al. NATURE REVIEWS MICROBIOLOGY
- Biotransformation of 2,4-dinitrotoluene by the beneficial association of engineered Pseudomonas putida with Arabidopsis thaliana
- (2019) Özlem Akkaya et al. 3 Biotech
- CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria
- (2019) Gaoyan Wang et al. Nature Microbiology
- Disease-induced assemblage of a plant-beneficial bacterial consortium
- (2018) Roeland L. Berendsen et al. ISME Journal
- Data processing, multi-omic pathway mapping, and metabolite activity analysis using XCMS Online
- (2018) Erica M Forsberg et al. Nature Protocols
- An engineered Pseudomonas putida can simultaneously degrade organophosphates, pyrethroids and carbamates
- (2018) Ting Gong et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota
- (2018) Lingfei Hu et al. Nature Communications
- Design of synthetic bacterial communities for predictable plant phenotypes
- (2018) Sur Herrera Paredes et al. PLOS BIOLOGY
- Metagenomic Profiling of Soil Microbes to Mine Salt Stress Tolerance Genes
- (2018) Vasim Ahmed et al. Frontiers in Microbiology
- A Community-Based Culture Collection for Targeting Novel Plant Growth-Promoting Bacteria from the Sugarcane Microbiome
- (2018) Jaderson Silveira Leite Armanhi et al. Frontiers in Plant Science
- Addressing the challenge of soil metaproteome complexity by improving metaproteome depth of coverage through two-dimensional liquid chromatography
- (2018) Stephen J. Callister et al. SOIL BIOLOGY & BIOCHEMISTRY
- Engineered integrative and conjugative elements for efficient and inducible DNA transfer to undomesticated bacteria
- (2018) Jennifer A. N. Brophy et al. Nature Microbiology
- The structure and function of the global citrus rhizosphere microbiome
- (2018) Jin Xu et al. Nature Communications
- Quantitative microbiome profiling links gut community variation to microbial load
- (2017) Doris Vandeputte et al. NATURE
- A communal catalogue reveals Earth’s multiscale microbial diversity
- (2017) Luke R. Thompson et al. NATURE
- High-throughput characterization of protein–protein interactions by reprogramming yeast mating
- (2017) David Younger et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Inducing the rhizosphere microbiome by biofertilizer application to suppress banana Fusarium wilt disease
- (2017) Lin Fu et al. SOIL BIOLOGY & BIOCHEMISTRY
- Arbuscular Mycorrhiza Augments Arsenic Tolerance in Wheat (Triticum aestivum L.) by Strengthening Antioxidant Defense System and Thiol Metabolism
- (2017) Surbhi Sharma et al. Frontiers in Plant Science
- Unknown risks to soil biodiversity from commercial fungal inoculants
- (2017) Miranda M. Hart et al. Nature Ecology & Evolution
- Crop-specific and single-species mycorrhizal inoculation is the best approach to improve crop growth in controlled environments
- (2016) Maarten Van Geel et al. Agronomy for Sustainable Development
- From dirt to industrial applications: Pseudomonas putida as a Synthetic Biology chassis for hosting harsh biochemical reactions
- (2016) Pablo I Nikel et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Role of Plant Growth Promoting Rhizobacteria in Agricultural Sustainability—A Review
- (2016) Pravin Vejan et al. MOLECULES
- Genome-wide mapping of mutations at single-nucleotide resolution for protein, metabolic and genome engineering
- (2016) Andrew D Garst et al. NATURE BIOTECHNOLOGY
- Global biogeography of microbial nitrogen-cycling traits in soil
- (2016) Michaeline B. Nelson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genetic circuit design automation
- (2016) A. A. K. Nielsen et al. SCIENCE
- Biocontainment of genetically modified organisms by synthetic protein design
- (2015) Daniel J. Mandell et al. NATURE
- 'Deadman' and 'Passcode' microbial kill switches for bacterial containment
- (2015) Clement T Y Chan et al. Nature Chemical Biology
- A Versatile Microfluidic Device for Automating Synthetic Biology
- (2015) Steve C. C. Shih et al. ACS Synthetic Biology
- The microbial ecology of permafrost
- (2014) Janet K. Jansson et al. NATURE REVIEWS MICROBIOLOGY
- Synthetic microbial ecosystems: an exciting tool to understand and apply microbial communities
- (2013) Karen De Roy et al. ENVIRONMENTAL MICROBIOLOGY
- Structure and Function of a Novel Cellulase 5 from Sugarcane Soil Metagenome
- (2013) Thabata M. Alvarez et al. PLoS One
- Plant growth-promoting rhizobacteria and root system functioning
- (2013) Jordan Vacheron et al. Frontiers in Plant Science
- Application of metatranscriptomics to soil environments
- (2012) Lilia C. Carvalhais et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca
- (2012) K. Temme et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Commercial rhizobial inoculants significantly enhance growth and nitrogen fixation of a promiscuous soybean variety in Kenyan soils
- (2011) Moses Thuita et al. BIOLOGY AND FERTILITY OF SOILS
- Genetically engineered bacteria: An emerging tool for environmental remediation and future research perspectives
- (2011) Jay Shankar Singh et al. GENE
- A new esterase EstD2 isolated from plant rhizosphere soil metagenome
- (2010) Myung Hwan Lee et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Potential of siderophore-producing bacteria for improving heavy metal phytoextraction
- (2010) Mani Rajkumar et al. TRENDS IN BIOTECHNOLOGY
- Use of a novel nonantibiotic triple marker gene cassette to monitor high survival of Pseudomonas fluorescens SBW25 on winter wheat in the field
- (2009) Lotta Jäderlund et al. FEMS MICROBIOLOGY ECOLOGY
- Cultivation of hitherto-uncultured bacteria belonging to the Verrucomicrobia subdivision 1 from the potato (Solanum tuberosum L.) rhizosphere
- (2009) Ulisses Nunes da Rocha et al. JOURNAL OF SOILS AND SEDIMENTS
- Initial community evenness favours functionality under selective stress
- (2009) Lieven Wittebolle et al. NATURE
- Single and co-inoculation of Bacillus subtilis and Azospirillum brasilense on Lycopersicon esculentum: Effects on plant growth and rhizosphere microbial community
- (2008) Cristiana Felici et al. APPLIED SOIL ECOLOGY
- Synthetic biology: discovering new worlds and new words. The new and not so new aspects of this emerging research field
- (2008) Víctor de Lorenzo et al. EMBO REPORTS
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search