Rhizobium Inoculation Drives the Shifting of Rhizosphere Fungal Community in a Host Genotype Dependent Manner

Genotype and rhizobium inoculation modulate the assembly of soybean rhizobacterial communities

(2019) Yongjia Zhong et al.   PLANT CELL AND ENVIRONMENT

A specialized metabolic network selectively modulates Arabidopsis root microbiota

(2019) Ancheng C. Huang et al.   SCIENCE

Lotus japonicus Symbiosis Genes Impact Microbial Interactions between Symbionts and Multikingdom Commensal Communities

(2019) Thorsten Thiergart et al.   mBio

Temporal shifts of fungal communities in the rhizosphere and on tubers in potato fields

(2018) Josephine Zimudzi et al.   Fungal Biology

Evolutionary history of mycorrhizal symbioses and global host plant diversity

(2018) Mark C. Brundrett et al.   NEW PHYTOLOGIST

MYB72-dependent coumarin exudation shapes root microbiome assembly to promote plant health

(2018) Ioannis A. Stringlis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota

(2018) Lingfei Hu et al.   Nature Communications

Microbial interactions within the plant holobiont

(2018) M. Amine Hassani et al.   Microbiome

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly

(2018) Kateryna Zhalnina et al.   Nature Microbiology

Soil bacterial networks are less stable under drought than fungal networks

(2018) Franciska T. de Vries et al.   Nature Communications

Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival

(2018) Paloma Durán et al.   CELL

Endophytic fungi associated with Monarda citriodora, an aromatic and medicinal plant and their biocontrol potential

(2017) Meenu Katoch et al.   PHARMACEUTICAL BIOLOGY

Root-associated fungal microbiota of nonmycorrhizalArabis alpinaand its contribution to plant phosphorus nutrition

(2017) Juliana Almario et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of Genetic Basis on Synergistic Interactions between Root Architecture and Biological Nitrogen Fixation in Soybean

(2017) Yongqing Yang et al.   Frontiers in Plant Science

Root Endophyte Colletotrichum tofieldiae Confers Plant Fitness Benefits that Are Phosphate Status Dependent

(2016) Kei Hiruma et al.   CELL

Sources of resistance and susceptibility to Septoria tritici blotch of wheat

(2016) Lia S. Arraiano et al.   MOLECULAR PLANT PATHOLOGY

Microbes Drive Evolution of Animals and Plants: the Hologenome Concept

(2016) Eugene Rosenberg et al.   mBio

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

Emerging Genomic Tools for Legume Breeding: Current Status and Future Prospects

(2016) Manish K. Pandey et al.   Frontiers in Plant Science

Does a Common Pathway Transduce Symbiotic Signals in Plant–Microbe Interactions?

(2016) Andrea Genre et al.   Frontiers in Plant Science

WRKY6 restricts Piriformospora indica-stimulated and phosphate-induced root development in Arabidopsis

(2015) Madhunita Bakshi et al.   BMC PLANT BIOLOGY

Microbiota and Host Nutrition across Plant and Animal Kingdoms

(2015) Stéphane Hacquard et al.   Cell Host & Microbe

The local environment determines the assembly of root endophytic fungi at a continental scale

(2015) Kyriaki Glynou et al.   ENVIRONMENTAL MICROBIOLOGY

The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes

(2015) Pablo R. Hardoim et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Mycorrhizal ecology and evolution: the past, the present, and the future

(2015) Marcel G. A. van der Heijden et al.   NEW PHYTOLOGIST

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Symbiotic options for the conquest of land

(2015) Katie J. Field et al.   TRENDS IN ECOLOGY & EVOLUTION

Associations with rhizosphere bacteria can confer an adaptive advantage to plants

(2015) Cara H. Haney et al.   Nature Plants

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Phylogeny and taxonomy of meristematic rock-inhabiting black fungi in the Dothideomycetes based on multi-locus phylogenies

(2014) E. Egidi et al.   FUNGAL DIVERSITY

Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants

(2014) Gregory Bonito et al.   MOLECULAR ECOLOGY

World population stabilization unlikely this century

(2014) P. Gerland et al.   SCIENCE

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Topographic diversity of fungal and bacterial communities in human skin

(2013) Keisha Findley et al.   NATURE

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Host Genotype Shapes the Foliar Fungal Microbiome of Balsam Poplar (Populus balsamifera)

(2013) Miklós Bálint et al.   PLoS One

A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees

(2013) Migun Shakya et al.   PLoS One

Sharing of Diverse Mycorrhizal and Root-Endophytic Fungi among Plant Species in an Oak-Dominated Cool–Temperate Forest

(2013) Hirokazu Toju et al.   PLoS One

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Microbial life in the phyllosphere

(2012) Julia A. Vorholt   NATURE REVIEWS MICROBIOLOGY

The composition of phyllosphere fungal assemblages of European beech (Fagus sylvatica ) varies significantly along an elevation gradient

(2012) Tristan Cordier et al.   NEW PHYTOLOGIST

Nonredundant Regulation of Rice Arbuscular Mycorrhizal Symbiosis by Two Members of thePHOSPHATE TRANSPORTER1Gene Family

(2012) Shu-Yi Yang et al.   PLANT CELL

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Distinct Microbial Communities within the Endosphere and Rhizosphere of Populus deltoides Roots across Contrasting Soil Types

(2011) Neil R. Gottel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Rhizobia enhance acquisition of phosphorus from different sources by soybean plants

(2011) Lu Qin et al.   PLANT AND SOIL

Genetic improvement for phosphorus efficiency in soybean: a radical approach

(2010) Xiurong Wang et al.   ANNALS OF BOTANY

Effect of DNA Extraction Method on the Apparent Microbial Diversity of Soil

(2010) O. Inceoglu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomic Analyses: Past and Future Trends

(2010) Carola Simon et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Drought meets acid: three new genera in a dothidealean clade of extremotolerant fungi

(2010) L. Selbmann et al.   STUDIES IN MYCOLOGY

Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperateQuercus macrocarpaphyllosphere

(2009) A. Jumpponen et al.   NEW PHYTOLOGIST

The rhizosphere zoo: An overview of plant-associated communities of microorganisms, including phages, bacteria, archaea, and fungi, and of some of their structuring factors

(2009) M. Buée et al.   PLANT AND SOIL

Cladosporium sphaerospermum as a new plant growth-promoting endophyte from the roots of Glycine max (L.) Merr.

(2009) Muhammad Hamayun et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Effects of host plant environment and Ustilago maydis infection on the fungal endophyte community of maize (Zea mays)

(2008) Jean J. Pan et al.   NEW PHYTOLOGIST

Effect of soil type and soybean genotype on fungal community in soybean rhizosphere during reproductive growth stages

(2008) Guanghua Wang et al.   PLANT AND SOIL

Global inputs of biological nitrogen fixation in agricultural systems

(2008) David F. Herridge et al.   PLANT AND SOIL

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE