Interrogating Plant-Microbe Interactions with Chemical Tools: Click Chemistry Reagents for Metabolic Labeling and Activity-Based Probes

Metabolic Implications of Using BioOrthogonal Non-Canonical Amino Acid Tagging (BONCAT) for Tracking Protein Synthesis

(2020) Katherine F. Steward et al.   Frontiers in Microbiology

The Multiple Facets of Plant–Fungal Interactions Revealed Through Plant and Fungal Secretomics

(2020) Delphine Vincent et al.   Frontiers in Plant Science

Extracellular proteolytic cascade in tomato activates immune protease Rcr3

(2020) Judith K. Paulus et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Citrus vascular proteomics highlights the role of peroxidases and serine proteases during Huanglongbing disease progression

(2020) Jessica Franco et al.   MOLECULAR & CELLULAR PROTEOMICS

Driving factors of epiphytic bacterial communities: A review

(2019) Rudolf O. Schlechter et al.   Journal of Advanced Research

Retargeting of a Plant Defense Protease by a Cyst Nematode Effector

(2019) Gennady V. Pogorelko et al.   PLANT JOURNAL

Systems Biology of Plant-Microbiome Interactions

(2019) Patricia A. Rodriguez et al.   Molecular Plant

Dynamic and Functional Profiling of Xylan-Degrading Enzymes in Aspergillus Secretomes Using Activity-Based Probes

(2019) Sybrin P. Schröder et al.   ACS Central Science

Whole-Plant Live Imaging of Reactive Oxygen Species

(2019) Yosef Fichman et al.   Molecular Plant

Effects of soil microbes on plant competition: a perspective from modern coexistence theory

(2019) Po‐Ju Ke et al.   ECOLOGICAL MONOGRAPHS

Bridging the Gap Between Single-Strain and Community-Level Plant-Microbe Chemical Interactions

(2019) Bridget S. O’Banion et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Constructing New Bioorthogonal Reagents and Reactions

(2018) R. David Row et al.   ACCOUNTS OF CHEMICAL RESEARCH

Chemical strategies to unravel bacterial–eukaryotic signaling

(2018) R. Gregor et al.   CHEMICAL SOCIETY REVIEWS

Chemical signaling involved in plant–microbe interactions

(2018) Fernanda Oliveira Chagas et al.   CHEMICAL SOCIETY REVIEWS

The soil microbiome — from metagenomics to metaphenomics

(2018) Janet K Jansson et al.   CURRENT OPINION IN MICROBIOLOGY

Protease Activities Triggered byRalstonia solanacearumInfection in Susceptible and Tolerant Tomato Lines

(2018) Marc Planas-Marquès et al.   MOLECULAR & CELLULAR PROTEOMICS

Small Molecule Probes Of ABA Biosynthesis And Signaling

(2018) Wim Dejonghe et al.   PLANT AND CELL PHYSIOLOGY

Bioorthogonal click chemistry for fluorescence imaging of choline phospholipids in plants

(2018) Janet M. Paper et al.   Plant Methods

Greatest soil microbial diversity found in micro-habitats

(2018) Elizabeth M. Bach et al.   SOIL BIOLOGY & BIOCHEMISTRY

An effector from the Huanglongbing-associated pathogen targets citrus proteases

(2018) Kelley Clark et al.   Nature Communications

The Chemistry of Plant–Microbe Interactions in the Rhizosphere and the Potential for Metabolomics to Reveal Signaling Related to Defense Priming and Induced Systemic Resistance

(2018) Msizi I. Mhlongo et al.   Frontiers in Plant Science

A Plant Biologist’s Toolbox to Study Translation

(2018) Serina M. Mazzoni-Putman et al.   Frontiers in Plant Science

The Future of Bioorthogonal Chemistry

(2018) Neal K. Devaraj   ACS Central Science

Metabolic niches in the rhizosphere microbiome: new tools and approaches to analyse metabolic mechanisms of plant–microbe nutrient exchange

(2018) Richard P Jacoby et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Probe-Enabled Approach for the Selective Isolation and Characterization of Functionally Active Subpopulations in the Gut Microbiome

(2018) Christopher Whidbey et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Bioorthogonal Noncanonical Amino Acid Tagging (BONCAT) Enables Time-Resolved Analysis of Protein Synthesis in Native Plant Tissue

(2017) Weslee S. Glenn et al.   PLANT PHYSIOLOGY

Click chemistry-based tracking reveals putative cell wall-located auxin binding sites in expanding cells

(2017) Jozef Mravec et al.   Scientific Reports

Direct imaging of glycans in Arabidopsis roots via click labeling of metabolically incorporated azido-monosaccharides

(2016) Jorin Hoogenboom et al.   BMC PLANT BIOLOGY

Strategies to improve reference databases for soil microbiomes

(2016) Jinlyung Choi et al.   ISME Journal

The Increasing Impact of Activity-Based Protein Profiling in Plant Science

(2016) Kyoko Morimoto et al.   PLANT AND CELL PHYSIOLOGY

Plant cell wall imaging by metabolic click-mediated labelling of rhamnogalacturonan II using azido 3-deoxy-d-manno-oct-2-ulosonic acid

(2016) Marie Dumont et al.   PLANT JOURNAL

Detecting N-myristoylation and S-acylation of host and pathogen proteins in plants using click chemistry

(2016) Patrick C. Boyle et al.   Plant Methods

Investigating Biochemical and Developmental Dependencies of Lignification with a Click-Compatible Monolignol Analog in Arabidopsis thaliana Stems

(2016) Jyotsna L. Pandey et al.   Frontiers in Plant Science

“Click Chemistry” for the Simple Determination of Fatty-Acid Uptake and Degradation: Revising the Role of Fatty-Acid Transporters

(2015) Alexander J. Pérez et al.   CHEMBIOCHEM

Activity-based protein profiling of microbes

(2015) Natalie C Sadler et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Activity profiling reveals changes in the diversity and activity of proteins in Arabidopsis roots in response to nematode infection

(2015) Marion Hütten et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

A Versatile Click-Compatible Monolignol Probe to Study Lignin Deposition in Plant Cell Walls

(2015) Jyotsna L. Pandey et al.   PLoS One

Development of a Clickable Designer Monolignol for Interrogation of Lignification in Plant Cell Walls

(2014) Natalie Bukowski et al.   BIOCONJUGATE CHEMISTRY

Click Chemistry in Complex Mixtures: Bioorthogonal Bioconjugation

(2014) Craig S. McKay et al.   CHEMISTRY & BIOLOGY

Prediction of the Fate of Organic Compounds in the Environment From Their Molecular Properties: A Review

(2014) Laure Mamy et al.   CRITICAL REVIEWS IN ENVIRONMENTAL SCIENCE AND TECHNOLOGY

Activity-based proteomic and metabolomic approaches for understanding metabolism

(2014) Devon Hunerdosse et al.   CURRENT OPINION IN BIOTECHNOLOGY

In situvisualization of newly synthesized proteins in environmental microbes using amino acid tagging and click chemistry

(2014) Roland Hatzenpichler et al.   ENVIRONMENTAL MICROBIOLOGY

Artificial soil studies reveal domain-specific preferences of microorganisms for the colonisation of different soil minerals and particle size fractions

(2014) Michael Hemkemeyer et al.   FEMS MICROBIOLOGY ECOLOGY

ω-Azido fatty acids as probes to detect fatty acid biosynthesis, degradation, and modification

(2014) Alexander J. Pérez et al.   JOURNAL OF LIPID RESEARCH

Broad-range Glycosidase Activity Profiling

(2014) Balakumaran Chandrasekar et al.   MOLECULAR & CELLULAR PROTEOMICS

A chemical inhibitor of jasmonate signaling targets JAR1 in Arabidopsis thaliana

(2014) Christian Meesters et al.   Nature Chemical Biology

Experimental approaches to study plant cell walls during plant-microbe interactions

(2014) Ye Xia et al.   Frontiers in Plant Science

Modified N-acyl-homoserine lactones as chemical probes for the elucidation of plant–microbe interactions

(2013) Heike Thomanek et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Activity profiling of vacuolar processing enzymes reveals a role for VPE during oomycete infection

(2012) Johana C. Misas-Villamil et al.   PLANT JOURNAL

Metabolic click-labeling with a fucose analog reveals pectin delivery, architecture, and dynamics in Arabidopsis cell walls

(2012) C. T. Anderson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mining the active proteome of Arabidopsis thaliana

(2011) Renier A. L. van der Hoorn   Frontiers in Plant Science

Activity-Based Protein Profiling: From Enzyme Chemistry to Proteomic Chemistry

(2008) Benjamin F. Cravatt et al.   Annual Review of Biochemistry

Effect of gamma-sterilization and autoclaving on soil organic matter structure as studied by solid state NMR, UV and fluorescence spectroscopy

(2008) A. E. Berns et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Fungal Effector Protein AVR2 Targets Diversifying Defense-Related Cys Proteases of Tomato

(2008) M. Shabab et al.   PLANT CELL

Minitags for small molecules: detecting targets of reactive small molecules in living plant tissues using ‘click chemistry’

(2008) Farnusch Kaschani et al.   PLANT JOURNAL