Signatures of local adaptation in candidate genes of oaks (Quercusspp.) with respect to present and future climatic conditions

Landscape genomic analysis of candidate genes for climate adaptation in a California endemic oak, Quercus lobata

(2016) V. L. Sork et al.   AMERICAN JOURNAL OF BOTANY

Using joint multivariate analyses of leaf morphology and molecular-genetic markers for taxon identification in three hybridizing European white oak species (Quercus spp.)

(2016) Christian Rellstab et al.   ANNALS OF FOREST SCIENCE

High-density linkage mapping and distribution of segregation distortion regions in the oak genome

(2016) Catherine Bodénès et al.   DNA RESEARCH

Genome-environment association study suggests local adaptation to climate at the regional scale in Fagus sylvatica

(2016) Andrea R. Pluess et al.   NEW PHYTOLOGIST

Signatures of natural selection on Pinus cembra and P. mugo along elevational gradients in the Alps

(2016) Elena Mosca et al.   Tree Genetics & Genomes

The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release

(2015) Isabelle Lesur et al.   BMC GENOMICS

Time to get moving: assisted gene flow of forest trees

(2015) Sally N. Aitken et al.   Evolutionary Applications

A practical guide to environmental association analysis in landscape genomics

(2015) Christian Rellstab et al.   MOLECULAR ECOLOGY

The relative power of genome scans to detect local adaptation depends on sampling design and statistical method

(2015) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Single-nucleotide polymorphism discovery and validation in high-density SNP array for genetic analysis in European white oaks

(2015) C. Lepoittevin et al.   Molecular Ecology Resources

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

(2015) Christophe Plomion et al.   Molecular Ecology Resources

The GI-CDF module of Arabidopsis affects freezing tolerance and growth as well as flowering

(2015) Fabio Fornara et al.   PLANT JOURNAL

Genetic variation of Central European oaks: shaped by evolutionary factors and human intervention?

(2015) Charalambos Neophytou et al.   Tree Genetics & Genomes

Over-Expression of SlSHN1 Gene Improves Drought Tolerance by Increasing Cuticular Wax Accumulation in Tomato

(2014) Ayed Al-Abdallat et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Landscape genomics and a common garden trial reveal adaptive differentiation to temperature across Europe in the tree speciesAlnus glutinosa

(2014) Hanne De Kort et al.   MOLECULAR ECOLOGY

Genome scan methods against more complex models: when and how much should we trust them?

(2014) Pierre de Villemereuil et al.   MOLECULAR ECOLOGY

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

(2014) Christian Schlötterer et al.   NATURE REVIEWS GENETICS

Correction: High Rates of Gene Flow by Pollen and Seed in Oak Populations across Europe

(2014) Sophie Gerber et al.   PLoS One

RNA-Seq Analysis of Quercus pubescens Leaves: De Novo Transcriptome Assembly, Annotation and Functional Markers Development

(2014) Sara Torre et al.   PLoS One

Transcriptional profiling of bud dormancy induction and release in oak by next-generation sequencing

(2013) Saneyoshi Ueno et al.   BMC GENOMICS

Shortage of nutrients and excess of toxic elements in soils limit the distribution of soil-sensitive tree species in temperate forests

(2013) Lorenz Walthert et al.   FOREST ECOLOGY AND MANAGEMENT

Imprints of Natural Selection Along Environmental Gradients in Phenology-Related Genes of Quercus petraea

(2013) F. J. Alberto et al.   GENETICS

Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models

(2013) Eric Frichot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

(2013) Stéphane De Mita et al.   MOLECULAR ECOLOGY

Population genomic footprints of selection and associations with climate in natural populations ofArabidopsis hallerifrom the Alps

(2013) Martin C. Fischer et al.   MOLECULAR ECOLOGY

Validation of SNP Allele Frequencies Determined by Pooled Next-Generation Sequencing in Natural Populations of a Non-Model Plant Species

(2013) Christian Rellstab et al.   PLoS One

Insights into drought adaptation of two European oak species revealed by nucleotide diversity of candidate genes

(2013) Andreas Homolka et al.   Tree Genetics & Genomes

Putting the landscape into the genomics of trees: approaches for understanding local adaptation and population responses to changing climate

(2013) V. L. Sork et al.   Tree Genetics & Genomes

DNA sequence variation and development of SNP markers in beech (Fagus sylvatica L.)

(2012) S. Seifert et al.   EUROPEAN JOURNAL OF FOREST RESEARCH

Characterizing genomic variation ofArabidopsis thaliana: the roles of geography and climate

(2012) JESSE R. LASKY et al.   MOLECULAR ECOLOGY

Climate change may cause severe loss in the economic value of European forest land

(2012) Marc Hanewinkel et al.   Nature Climate Change

Two highly validated multiplexes (12-plex and 8-plex) for species delimitation and parentage analysis in oaks (Quercus spp.)

(2011) E. GUICHOUX et al.   Molecular Ecology Resources

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

Role of waterlogging-responsive genes in shaping interspecific differentiation between two sympatric oak species

(2011) G. Le Provost et al.   TREE PHYSIOLOGY

REPRODUCTIVE PATTERNS SHAPE INTROGRESSION DYNAMICS AND SPECIES SUCCESSION WITHIN THE EUROPEAN WHITE OAK SPECIES COMPLEX

(2010) Olivier Lepais et al.   EVOLUTION

Using Population Genomics to Detect Selection in Natural Populations: Key Concepts and Methodological Considerations

(2010)   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Gene movement and genetic association with regional climate gradients in California valley oak (Quercus lobata Née) in the face of climate change

(2010) VICTORIA L. SORK et al.   MOLECULAR ECOLOGY

Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils

(2010) Thomas L Turner et al.   NATURE GENETICS

Adaptation – not by sweeps alone

(2010) Jonathan K. Pritchard et al.   NATURE REVIEWS GENETICS

Adaptation genomics: the next generation

(2010) Jessica Stapley et al.   TRENDS IN ECOLOGY & EVOLUTION

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Contrasting relationships between the diversity of candidate genes and variation of bud burst in natural and segregating populations of European oaks

(2009) J Derory et al.   HEREDITY

Species relative abundance and direction of introgression in oaks

(2009) O. LEPAIS et al.   MOLECULAR ECOLOGY

Adaptation, migration or extirpation: climate change outcomes for tree populations

(2008) Sally N. Aitken et al.   Evolutionary Applications

Galactinol and Raffinose Constitute a Novel Function to Protect Plants from Oxidative Damage

(2008) A. Nishizawa et al.   PLANT PHYSIOLOGY

Adaptation from standing genetic variation

(2007) R BARRETT et al.   TRENDS IN ECOLOGY & EVOLUTION