RNA-Seq Analysis of Quercus pubescens Leaves: De Novo Transcriptome Assembly, Annotation and Functional Markers Development

De novo assembly and characterization of leaf transcriptome for the development of functional molecular markers of the extremophile multipurpose tree species Prosopis alba

(2013) Susana L Torales et al.   BMC GENOMICS

De novo transcriptome sequencing of radish (Raphanus sativus L.) and analysis of major genes involved in glucosinolate metabolism

(2013) Yan Wang et al.   BMC GENOMICS

The challenge of Mediterranean sclerophyllous vegetation under climate change: From acclimation to adaptation

(2013) Filippo Bussotti et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Plant P450s as versatile drivers for evolution of species-specific chemical diversity

(2013) B. Hamberger et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Transcriptomic Analysis of a Tertiary Relict Plant, Extreme Xerophyte Reaumuria soongorica to Identify Genes Related to Drought Adaptation

(2013) Yong Shi et al.   PLoS One

Drought and air warming affect the species-specific levels of stress-related foliar metabolites of three oak species on acidic and calcareous soil

(2013) B. Hu et al.   TREE PHYSIOLOGY

De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes

(2012) Hamid Ashrafi et al.   BMC GENOMICS

Transcriptome survey of Patagonian southern beech Nothofagus nervosa (= N. Alpina): assembly, annotation and molecular marker discovery

(2012) Susana L Torales et al.   BMC GENOMICS

The R2R3-MYB, bHLH, WD40, and related transcription factors in flavonoid biosynthesis

(2012) Lei Zhao et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Climate change may cause severe loss in the economic value of European forest land

(2012) Marc Hanewinkel et al.   Nature Climate Change

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)

(2011) Zhangying Wang et al.   BMC GENOMICS

Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers

(2011) Wenliang Wei et al.   BMC GENOMICS

Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds

(2011) Cheng-Ying Shi et al.   BMC GENOMICS

Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)

(2011) José Blanca et al.   BMC GENOMICS

Critical assessment of assembly strategies for non-model species mRNA-Seq data and application of next-generation sequencing to the comparison of C3 and C4 species

(2011) Andrea Bräutigam et al.   JOURNAL OF EXPERIMENTAL BOTANY

RNA-Seq analysis and de novo transcriptome assembly of Hevea brasiliensis

(2011) Zhihui Xia et al.   PLANT MOLECULAR BIOLOGY

Novel polymorphic nuclear microsatellite markers for Pinus sylvestris L.

(2011) F. Sebastiani et al.   Conservation Genetics Resources

Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

(2010) Saneyoshi Ueno et al.   BMC GENOMICS

A fast and cost-effective approach to develop and map EST-SSR markers: oak as a case study

(2010) Jérôme Durand et al.   BMC GENOMICS

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

Molecular Footprints of Local Adaptation in Two Mediterranean Conifers

(2010) D. Grivet et al.   MOLECULAR BIOLOGY AND EVOLUTION

MYB transcription factors in Arabidopsis

(2010) Christian Dubos et al.   TRENDS IN PLANT SCIENCE

Shade Tolerance, a Key Plant Feature of Complex Nature and Consequences

(2008) Fernando Valladares et al.   Annual Review of Ecology Evolution and Systematics

A Genetic Regulatory Network in the Development of Trichomes and Root Hairs

(2008) Tetsuya Ishida et al.   Annual Review of Plant Biology

Influence of light availability on growth, leaf morphology and plant architecture of beech (Fagus sylvatica L.), maple (Acer pseudoplatanus L.) and ash (Fraxinus excelsior L.) saplings

(2008) Any Mary Petriţan et al.   EUROPEAN JOURNAL OF FOREST RESEARCH

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

(2008) U. Nagalakshmi et al.   SCIENCE

Climate change projections for the Mediterranean region

(2007) Filippo Giorgi et al.   GLOBAL AND PLANETARY CHANGE