Enhanced Bacterium–Phage Symbiosis in Attached Microbial Aggregates on a Membrane Surface Facing Elevated Hydraulic Stress
出版年份 2023 全文链接
标题
Enhanced Bacterium–Phage Symbiosis in Attached Microbial Aggregates on a Membrane Surface Facing Elevated Hydraulic Stress
作者
关键词
-
出版物
ENVIRONMENTAL SCIENCE & TECHNOLOGY
Volume -, Issue -, Pages -
出版商
American Chemical Society (ACS)
发表日期
2023-11-06
DOI
10.1021/acs.est.3c05452
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- RCSB Protein Data Bank: Efficient Searching and Simultaneous Access to One Million Computed Structure Moddels Alongside the PDB Structures Enabled by Architectural Advances
- (2023) Sebastian Bittrich et al. JOURNAL OF MOLECULAR BIOLOGY
- Microbial density-dependent viral dynamics and low activity of temperate phages in the activated sludge process
- (2023) Ruyin Liu et al. WATER RESEARCH
- Potential Auxiliary Metabolic Capabilities and Activities Reveal Biochemical Impacts of Viruses in Municipal Wastewater Treatment Plants
- (2023) Ling Yuan et al. Environmental Science & Technology
- Mesophilic and thermophilic viruses are associated with nutrient cycling during hyperthermophilic composting
- (2023) Hanpeng Liao et al. ISME Journal
- Benzo[a]pyrene stress impacts adaptive strategies and ecological functions of earthworm intestinal viromes
- (2023) Rong Xia et al. ISME Journal
- Prokaryotic community interchange between distinct microhabitats causes community pressure on anammox biofilm development
- (2023) Weiwei Cai et al. WATER RESEARCH
- Viruses interact with hosts that span distantly related microbial domains in dense hydrothermal mats
- (2023) Yunha Hwang et al. Nature Microbiology
- A social niche breadth score reveals niche range strategies of generalists and specialists
- (2023) F. A. Bastiaan von Meijenfeldt et al. Nature Ecology & Evolution
- Disentangling direct from indirect relationships in association networks
- (2022) Naijia Xiao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Microbiome differential abundance methods produce different results across 38 datasets
- (2022) Jacob T. Nearing et al. Nature Communications
- CHERRY: a Computational metHod for accuratE pRediction of virus–pRokarYotic interactions using a graph encoder–decoder model
- (2022) Jiayu Shang et al. BRIEFINGS IN BIOINFORMATICS
- Towards understanding mechanisms and functional consequences of bacterial interactions with members of various kingdoms in complex biofilms that abound in nature
- (2022) Faizan Ahmed Sadiq et al. FEMS MICROBIOLOGY REVIEWS
- Pseudomonas aeruginosa polysaccharide Psl supports airway microbial community development
- (2022) Sara N. Stoner et al. ISME Journal
- A mixed blessing of viruses in wastewater treatment plants
- (2022) Ling-Dong Shi et al. WATER RESEARCH
- Community assembly of microbial habitat generalists and specialists in urban aquatic ecosystems explained more by habitat type than pollution gradient
- (2022) Mamun Abdullah Al et al. WATER RESEARCH
- Flocculation with heterogeneous composition in water environments: A review
- (2022) Que Nguyen Ho et al. WATER RESEARCH
- GTDB-Tk v2: memory friendly classification with the genome taxonomy database
- (2022) Pierre-Alain Chaumeil et al. BIOINFORMATICS
- Phage-host interactions: The neglected part of biological wastewater treatment
- (2022) Xiang Tang et al. WATER RESEARCH
- PhaTYP: predicting the lifestyle for bacteriophages using BERT
- (2022) Jiayu Shang et al. BRIEFINGS IN BIOINFORMATICS
- IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata
- (2022) Antonio Pedro Camargo et al. NUCLEIC ACIDS RESEARCH
- UniProt: the Universal Protein Knowledgebase in 2023
- (2022) et al. NUCLEIC ACIDS RESEARCH
- Viral community-wide auxiliary metabolic genes differ by lifestyles, habitats, and hosts
- (2022) Xiao-Qing Luo et al. Microbiome
- VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
- (2021) Jiarong Guo et al. Microbiome
- Metabolic flexibility allows bacterial habitat generalists to become dominant in a frequently disturbed ecosystem
- (2021) Ya-Jou Chen et al. ISME Journal
- Diversity and distribution of viruses inhabiting the deepest ocean on Earth
- (2021) Huahua Jian et al. ISME Journal
- Bacillus subtilis biofilm formation and social interactions
- (2021) Sofia Arnaouteli et al. NATURE REVIEWS MICROBIOLOGY
- Interactions between bacterial and phage communities in natural environments
- (2021) Anne Chevallereau et al. NATURE REVIEWS MICROBIOLOGY
- Seasonal dynamics of the microbial community in two full-scale wastewater treatment plants: Diversity, composition, phylogenetic group based assembly and co-occurrence pattern
- (2021) Chenxiang Sun et al. WATER RESEARCH
- Prokaryotic viruses impact functional microorganisms in nutrient removal and carbon cycle in wastewater treatment plants
- (2021) Yiqiang Chen et al. Nature Communications
- Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation
- (2021) Akbar Adjie Pratama et al. PeerJ
- Understanding the Complex Phage-Host Interactions in Biofilm Communities
- (2021) Diana P. Pires et al. Annual Review of Virology
- DeePhage: distinguishing virulent and temperate phage-derived sequences in metavirome data with a deep learning approach
- (2021) Shufang Wu et al. GigaScience
- Enhanced mutualistic symbiosis between soil phages and bacteria with elevated chromium-induced environmental stress
- (2021) Dan Huang et al. Microbiome
- Bacteriophages in Biological Wastewater Treatment Systems: Occurrence, Characterization, and Function
- (2021) Viviane Runa et al. Frontiers in Microbiology
- Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification
- (2021) Oliver Schwengers et al. Microbial Genomics
- Molecular Insights into Extracellular Polymeric Substances in Activated Sludge
- (2020) Han-Qing Yu ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Biofilm Matrixome: Extracellular Components in Structured Microbial Communities
- (2020) L. Karygianni et al. TRENDS IN MICROBIOLOGY
- Biofouling and me: My Stockholm syndrome with biofilms
- (2020) Hans-Curt Flemming WATER RESEARCH
- Water Treatment: Are Membranes the Panacea?
- (2020) Matthew R. Landsman et al. Annual Review of Chemical and Biomolecular Engineering
- DRAM for distilling microbial metabolism to automate the curation of microbiome function
- (2020) Michael Shaffer et al. NUCLEIC ACIDS RESEARCH
- VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences
- (2020) Kristopher Kieft et al. Microbiome
- Hormetic Promotion of Biofilm Growth by Polyvalent Bacteriophages at Low Concentrations
- (2020) Bo Zhang et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- The environment drives microbial trait variability in aquatic habitats
- (2020) Sara Beier et al. MOLECULAR ECOLOGY
- Hitchhiking Behavior in Bacteriophages Facilitates Phage Infection and Enhances Carrier Bacteria Colonization
- (2020) Zhuodong Yu et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- CheckV assesses the quality and completeness of metagenome-assembled viral genomes
- (2020) Stephen Nayfach et al. NATURE BIOTECHNOLOGY
- The genus Sphingopyxis: Systematics, ecology, and bioremediation potential - A review
- (2020) Monika Sharma et al. JOURNAL OF ENVIRONMENTAL MANAGEMENT
- Host-hijacking and planktonic piracy: how phages command the microbial high seas
- (2019) Joanna Warwick-Dugdale et al. Virology Journal
- Bacteria and archaea on Earth and their abundance in biofilms
- (2019) Hans-Curt Flemming et al. NATURE REVIEWS MICROBIOLOGY
- Bacteriophages of the Human Gut: The “Known Unknown” of the Microbiome
- (2019) Andrey N. Shkoporov et al. Cell Host & Microbe
- Marine DNA Viral Macro- and Microdiversity from Pole to Pole
- (2019) Ann C. Gregory et al. CELL
- Coupled virus - bacteria interactions and ecosystem function in an engineered microbial system
- (2019) M.R. Brown et al. WATER RESEARCH
- Global diversity and biogeography of bacterial communities in wastewater treatment plants
- (2019) Linwei Wu et al. Nature Microbiology
- Importance of Species Sorting and Immigration on the Bacterial Assembly of Different-Sized Aggregates in a Full-Scale Aerobic Granular Sludge Plant
- (2019) Muhammad Ali et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- A novel mode of air recycling favored stable operation of the aerobic granular sludge process via calcium accumulation
- (2019) Zhiming Zhang et al. CHEMICAL ENGINEERING JOURNAL
- Deciphering links between bacterial interactions and spatial organization in multispecies biofilms
- (2019) Wenzheng Liu et al. ISME Journal
- Temperature-dependent changes to host–parasite interactions alter the thermal performance of a bacterial host
- (2019) Daniel Padfield et al. ISME Journal
- Metabolic and biogeochemical consequences of viral infection in aquatic ecosystems
- (2019) Amy E. Zimmerman et al. NATURE REVIEWS MICROBIOLOGY
- Characterization of stratified EPS and their role in the initial adhesion of anammox consortia
- (2019) Weigang Wang et al. WATER RESEARCH
- Phage or foe: an insight into the impact of viral predation on microbial communities
- (2018) Lucía Fernández et al. ISME Journal
- A strong link between marine microbial community composition and function challenges the idea of functional redundancy
- (2018) Pierre E. Galand et al. ISME Journal
- Keystone taxa as drivers of microbiome structure and functioning
- (2018) Samiran Banerjee et al. NATURE REVIEWS MICROBIOLOGY
- CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
- (2018) David Couvin et al. NUCLEIC ACIDS RESEARCH
- SWISS-MODEL: homology modelling of protein structures and complexes
- (2018) Andrew Waterhouse et al. NUCLEIC ACIDS RESEARCH
- Nitrosospira Cluster 8a Plays a Predominant Role in the Nitrification Process of a Subtropical Ultisol under Long-Term Inorganic and Organic Fertilization
- (2018) Yongxin Lin et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis
- (2018) Gherman V. Uritskiy et al. Microbiome
- Minimum Information about an Uncultivated Virus Genome (MIUViG)
- (2018) Simon Roux et al. NATURE BIOTECHNOLOGY
- Aquatic organic matter: Classification and interaction with organic microcontaminants
- (2018) Vanda Artifon et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Membrane biofilm communities in full-scale membrane bioreactors are not randomly assembled and consist of a core microbiome
- (2017) Gerald K. Matar et al. WATER RESEARCH
- Dominance of Sulfuritalea species in nitrate-depleted water of a stratified freshwater lake and arsenate respiration ability within the genus
- (2017) Tomohiro Watanabe et al. Environmental Microbiology Reports
- vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria
- (2017) Benjamin Bolduc et al. PeerJ
- tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes
- (2016) Todd M. Lowe et al. NUCLEIC ACIDS RESEARCH
- Comparison of microbial communities of activated sludge and membrane biofilm in 10 full-scale membrane bioreactors
- (2016) Sung Jun Jo et al. WATER RESEARCH
- Attached biofilms and suspended aggregates are distinct microbial lifestyles emanating from differing hydraulics
- (2016) Robert Niederdorfer et al. Nature Microbiology
- Microbial dynamics and properties of aerobic granules developed in a laboratory-scale sequencing batch reactor with an intermediate filamentous bulking stage
- (2015) H. Aqeel et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
- (2015) Dinghua Li et al. BIOINFORMATICS
- Bacterial community compositions of coking wastewater treatment plants in steel industry revealed by Illumina high-throughput sequencing
- (2015) Qiao Ma et al. BIORESOURCE TECHNOLOGY
- The Phyre2 web portal for protein modeling, prediction and analysis
- (2015) Lawrence A Kelley et al. Nature Protocols
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Microbial degradation of 2,4-dichlorophenoxyacetic acid: Insight into the enzymes and catabolic genes involved, their regulation and biotechnological implications
- (2014) Ajit Kumar et al. CRITICAL REVIEWS IN MICROBIOLOGY
- A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
- (2014) Bas E. Dutilh et al. Nature Communications
- Bacterial biofilm development as a multicellular adaptation: antibiotic resistance and new therapeutic strategies
- (2013) César de la Fuente-Núñez et al. CURRENT OPINION IN MICROBIOLOGY
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- Molecular ecological network analyses
- (2012) Ye Deng et al. BMC BIOINFORMATICS
- Ab initio gene identification in metagenomic sequences
- (2010) Wenhan Zhu et al. NUCLEIC ACIDS RESEARCH
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Vibrio biofilms: so much the same yet so different
- (2009) Fitnat H. Yildiz et al. TRENDS IN MICROBIOLOGY
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started