Prokaryotic community interchange between distinct microhabitats causes community pressure on anammox biofilm development

Top-down and bottom-up cohesiveness in microbial community coalescence

(2022) Juan Diaz-Colunga et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distinct growth stages controlled by the interplay of deterministic and stochastic processes in functional anammox biofilms

(2021) Robert Niederdorfer et al.   WATER RESEARCH

Carrier type induces anammox biofilm structure and the nitrogen removal pathway: Demonstration in a full-scale partial nitritation/anammox process

(2021) Shenhua Yang et al.   BIORESOURCE TECHNOLOGY

Challenges of THP-AD centrate treatment using partial nitritation-anammox (PN/A) – inhibition, biomass washout, low alkalinity, recalcitrant and more

(2021) Shenbin Cao et al.   WATER RESEARCH

Predation increases multiple components of microbial diversity in activated sludge communities

(2021) Alfred Burian et al.   ISME Journal

Feasibility of partial-denitrification/ anammox for pharmaceutical wastewater treatment in a hybrid biofilm reactor

(2021) Jingwen Zhang et al.   WATER RESEARCH

Ecological niche differentiation among anammox bacteria

(2020) Lei Zhang et al.   WATER RESEARCH

The effect of carrier addition on Anammox start-up and microbial community: a review

(2020) Mabruk Adams et al.   REVIEWS IN ENVIRONMENTAL SCIENCE AND BIO-TECHNOLOGY

Dynamics of bacterial population growth in biofilms resemble spatial and structural aspects of urbanization

(2020) Amauri J. Paula et al.   Nature Communications

Eco-evolutionary significance of “loners”

(2020) Fernando W. Rossine et al.   PLOS BIOLOGY

Semi-quantitative detection of hydrogen-associated or -free electron transfer within methanogenic biofilm of microbial electrosynthesis

(2020) Weiwei Cai et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming

(2020) Daliang Ning et al.   Nature Communications

Critical Analysis of Biomass Retention Strategies in Mainstream and Sidestream ANAMMOX-Mediated Nitrogen Removal Systems

(2020) Kiprotich Kosgey et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Ecological drivers switch from bottom–up to top–down during model microbial community successions

(2020) Sven P. Tobias-Hünefeldt et al.   ISME Journal

Global diversity and biogeography of bacterial communities in wastewater treatment plants

(2019) Linwei Wu et al.   Nature Microbiology

Denitrifiers in Mainstream Anammox Processes: Competitors or Supporters?

(2019) Shenbin Cao et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Anammox and beyond

(2019) J. Gijs Kuenen   ENVIRONMENTAL MICROBIOLOGY

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Biodiversity and species competition regulate the resilience of microbial biofilm community

(2017) Kai Feng et al.   MOLECULAR ECOLOGY

Quantitative microbiome profiling links gut community variation to microbial load

(2017) Doris Vandeputte et al.   NATURE

Metabolic network analysis reveals microbial community interactions in anammox granules

(2017) Christopher E. Lawson et al.   Nature Communications

Spatial structure, cooperation and competition in biofilms

(2016) Carey D. Nadell et al.   NATURE REVIEWS MICROBIOLOGY

Nitrogen removal by granular nitritation–anammox in an upflow membrane-aerated biofilm reactor

(2016) Xiaojin Li et al.   WATER RESEARCH

Genome-based microbial ecology of anammox granules in a full-scale wastewater treatment system

(2016) Daan R. Speth et al.   Nature Communications

Attached biofilms and suspended aggregates are distinct microbial lifestyles emanating from differing hydraulics

(2016) Robert Niederdorfer et al.   Nature Microbiology

The activated sludge ecosystem contains a core community of abundant organisms

(2015) Aaron M Saunders et al.   ISME Journal

Interchange of entire communities: microbial community coalescence

(2015) Matthias C. Rillig et al.   TRENDS IN ECOLOGY & EVOLUTION

Estimating and mapping ecological processes influencing microbial community assembly

(2015) James C. Stegen et al.   Frontiers in Microbiology

Low Temperature Partial Nitritation/Anammox in a Moving Bed Biofilm Reactor Treating Low Strength Wastewater

(2014) Eva M. Gilbert et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Full-scale partial nitritation/anammox experiences – An application survey

(2014) Susanne Lackner et al.   WATER RESEARCH

Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity

(2014) A. Shade et al.   mBio

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Stochastic Assembly Leads to Alternative Communities with Distinct Functions in a Bioreactor Microbial Community

(2013) J. Zhou et al.   mBio

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Microbial interactions in building of communities

(2012) C.J. Wright et al.   Molecular Oral Microbiology

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Assembly history dictates ecosystem functioning: evidence from wood decomposer communities

(2010) Tadashi Fukami et al.   ECOLOGY LETTERS

Conceptual Synthesis in Community Ecology

(2010) Mark Vellend   QUARTERLY REVIEW OF BIOLOGY

Bacterial competition: surviving and thriving in the microbial jungle

(2009) Michael E. Hibbing et al.   NATURE REVIEWS MICROBIOLOGY