Nitrosospira Cluster 8a Plays a Predominant Role in the Nitrification Process of a Subtropical Ultisol under Long-Term Inorganic and Organic Fertilization

Nitrification and nitrifiers in acidic soils

(2018) Yaying Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-term effects of grazing, liming and nutrient fertilization on the nitrifying community of grassland soils

(2018) Gary Egan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Neutrophilic bacteria are responsible for autotrophic ammonia oxidation in an acidic forest soil

(2018) Xueru Huang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Peaks of in situ N2 O emissions are influenced by N2 O-producing and reducing microbial communities across arable soils

(2017) Luiz A. Domeignoz-Horta et al.   GLOBAL CHANGE BIOLOGY

pH drives ammonia oxidizing bacteria rather than archaea thereby stimulate nitrification under Ageratina adenophora colonization

(2017) Haifeng Xiao et al.   SOIL BIOLOGY & BIOCHEMISTRY

Response of ammonia-oxidizing archaea and bacteria in calcareous soil to mineral and organic fertilizer application and their relative contribution to nitrification

(2017) Rui Tao et al.   SOIL BIOLOGY & BIOCHEMISTRY

Ammonium availability and temperature control contributions of ammonia oxidizing bacteria and archaea to nitrification in an agricultural soil

(2017) Yang Ouyang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Distinct drivers of activity, abundance, diversity and composition of ammonia-oxidizers: evidence from a long-term field experiment

(2017) Junjie Guo et al.   SOIL BIOLOGY & BIOCHEMISTRY

Time-dependent shifts in populations and activity of bacterial and archaeal ammonia oxidizers in response to liming in acidic soils

(2017) Miao-Miao Zhang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Wheat straw-derived biochar amendment stimulated N 2 O emissions from rice paddy soils by regulating the amoA genes of ammonia-oxidizing bacteria

(2017) Yongxin Lin et al.   SOIL BIOLOGY & BIOCHEMISTRY

Identifying Potential Mechanisms Enabling Acidophily in the Ammonia-Oxidizing Archaeon “Candidatus Nitrosotalea devanaterra”

(2016) Laura E. Lehtovirta-Morley et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Changing roles of ammonia-oxidizing bacteria and archaea in a continuously acidifying soil caused by over-fertilization with nitrogen

(2016) He Song et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Response of microbial functional groups involved in soil N cycle to N, P and NP fertilization in Tibetan alpine meadows

(2016) Wenbin Ma et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effects of climate warming and elevated CO 2 on autotrophic nitrification and nitrifiers in dryland ecosystems

(2016) Hang-Wei Hu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Quantitative and compositional responses of ammonia-oxidizing archaea and bacteria to long-term field fertilization

(2016) Chao Xue et al.   Scientific Reports

The influence of salinity on the abundance, transcriptional activity, and diversity of AOA and AOB in an estuarine sediment: a microcosm study

(2015) Yan Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Complete nitrification by Nitrospira bacteria

(2015) Holger Daims et al.   NATURE

Changes in the abundance and structure of bacterial communities under long-term fertilization treatments in a peanut monocropping system

(2015) Wuxing Liu et al.   PLANT AND SOIL

Effects of 44 years of chronic nitrogen fertilization on the soil nitrifying community of permanent grassland

(2015) Xue Zhou et al.   SOIL BIOLOGY & BIOCHEMISTRY

Latitudinal Distribution of Ammonia-Oxidizing Bacteria and Archaea in the Agricultural Soils of Eastern China

(2014) Hongchen Jiang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Water addition regulates the metabolic activity of ammonia oxidizers responding to environmental perturbations in dry subhumid ecosystems

(2014) Hang-Wei Hu et al.   ENVIRONMENTAL MICROBIOLOGY

The effect of soil pH and dicyandiamide (DCD) on N2O emissions and ammonia oxidiser abundance in a stimulated grazed pasture soil

(2014) Aimee Robinson et al.   JOURNAL OF SOILS AND SEDIMENTS

Predicting the efficacy of the nitrification inhibitor dicyandiamide in pastoral soils

(2014) Steven Wakelin et al.   PLANT AND SOIL

Active Ammonia Oxidizers in an Acidic Soil Are Phylogenetically Closely Related to Neutrophilic Archaeon

(2013) Baozhan Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Soil aggregate stratification of nematodes and ammonia oxidizers affects nitrification in an acid soil

(2013) Yuji Jiang et al.   ENVIRONMENTAL MICROBIOLOGY

Multi-factorial drivers of ammonia oxidizer communities: evidence from a national soil survey

(2013) Huaiying Yao et al.   ENVIRONMENTAL MICROBIOLOGY

Nitrification rates in Arctic soils are associated with functionally distinct populations of ammonia-oxidizing archaea

(2013) Ricardo J Eloy Alves et al.   ISME Journal

pH-dependent distribution of soil ammonia oxidizers across a large geographical scale as revealed by high-throughput pyrosequencing

(2013) Hang-Wei Hu et al.   JOURNAL OF SOILS AND SEDIMENTS

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Shifts between ammonia-oxidizing bacteria and archaea in relation to nitrification potential across trophic gradients in two large Chinese lakes (Lake Taihu and Lake Chaohu)

(2013) Jie Hou et al.   WATER RESEARCH

Differential responses of ammonia-oxidizing archaea and bacteria to long-term fertilization in a New England salt marsh

(2013) Xuefeng Peng et al.   Frontiers in Microbiology

Impact of Short-Term Acidification on Nitrification and Nitrifying Bacterial Community Dynamics in Soilless Cultivation Media

(2012) Eddie Cytryn et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nitrification of archaeal ammonia oxidizers in acid soils is supported by hydrolysis of urea

(2012) Lu Lu et al.   ISME Journal

Current insights into the autotrophic thaumarchaeal ammonia oxidation in acidic soils

(2012) Ji-Zheng He et al.   SOIL BIOLOGY & BIOCHEMISTRY

Different roles of rhizosphere effect and long-term fertilization in the activity and community structure of ammonia oxidizers in a calcareous fluvo-aquic soil

(2012) Chao Ai et al.   SOIL BIOLOGY & BIOCHEMISTRY

Links between Ammonia Oxidizer Community Structure, Abundance, and Nitrification Potential in Acidic Soils

(2011) Huaiying Yao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Ammonia-oxidizing archaea have more important role than ammonia-oxidizing bacteria in ammonia oxidation of strongly acidic soils

(2011) Li-Mei Zhang et al.   ISME Journal

Niche specialization of terrestrial archaeal ammonia oxidizers

(2011) C. Gubry-Rangin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Responses of bacterial and archaeal ammonia oxidizers to soil organic and fertilizer amendments under long-term management

(2010) Ella Wessén et al.   APPLIED SOIL ECOLOGY

Archaea rather than bacteria control nitrification in two agricultural acidic soils

(2010) Cécile Gubry-Rangin et al.   FEMS MICROBIOLOGY ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Heterogeneity of archaeal and bacterial ammonia-oxidizing communities in Lake Taihu, China

(2010) Yucheng Wu et al.   Environmental Microbiology Reports

Dynamics and functional relevance of ammonia-oxidizing archaea in two agricultural soils

(2009) Kristina Schauss et al.   ENVIRONMENTAL MICROBIOLOGY

Altitude ammonia-oxidizing bacteria and archaea in soils of Mount Everest

(2009) Li-Mei Zhang et al.   FEMS MICROBIOLOGY ECOLOGY

Nitrification driven by bacteria and not archaea in nitrogen-rich grassland soils

(2009) H. J. Di et al.   Nature Geoscience

Reducing environmental risk by improving N management in intensive Chinese agricultural systems

(2009) X.-T. Ju et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria

(2008) Graeme W. Nicol et al.   ENVIRONMENTAL MICROBIOLOGY

Comparative analysis of archaeal 16S rRNA and amoA genes to estimate the abundance and diversity of ammonia-oxidizing archaea in marine sediments

(2008) Soo-Je Park et al.   EXTREMOPHILES

Changes in nitrification and bacterial community structure upon cross-inoculation of Scots pine forest soils with different initial nitrification rates

(2008) Rully A. Nugroho et al.   SOIL BIOLOGY & BIOCHEMISTRY