Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma
出版年份 2023 全文链接
标题
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma
作者
关键词
-
出版物
DNA RESEARCH
Volume 30, Issue 4, Pages -
出版商
Oxford University Press (OUP)
发表日期
2023-06-26
DOI
10.1093/dnares/dsad014
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- DAVID: a web server for functional enrichment analysis and functional annotation of gene lists (2021 update)
- (2022) Brad T Sherman et al. NUCLEIC ACIDS RESEARCH
- Efficient assembly of nanopore reads via highly accurate and intact error correction
- (2021) Ying Chen et al. Nature Communications
- Genomic Signatures Supporting the Symbiosis and Formation of Chitinous Tube in the Deep-Sea Tubeworm Paraescarpia echinospica
- (2021) Yanan Sun et al. MOLECULAR BIOLOGY AND EVOLUTION
- BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes
- (2021) Mosè Manni et al. MOLECULAR BIOLOGY AND EVOLUTION
- Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm Genome
- (2021) André Luiz de Oliveira et al. MOLECULAR BIOLOGY AND EVOLUTION
- UniProt: the universal protein knowledgebase in 2021
- (2020) et al. NUCLEIC ACIDS RESEARCH
- Cell Biology of Coral Symbiosis: Foundational Study Can Inform Solutions to the Coral Reef Crisis
- (2019) Virginia M Weis INTEGRATIVE AND COMPARATIVE BIOLOGY
- Identification and characterization of a symbiotic agglutination-related C-type lectin from the hydrothermal vent shrimp Rimicaris exoculata
- (2019) Xiao-Li Liu et al. FISH & SHELLFISH IMMUNOLOGY
- Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi
- (2019) Yuanning Li et al. BMC BIOLOGY
- Distinct functions of TMC channels: a comparative overview
- (2019) Xiaomin Yue et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Genomic, transcriptomic, and proteomic insights into the symbiosis of deep-sea tubeworm holobionts
- (2019) Yi Yang et al. ISME Journal
- Host-Microbe Interactions in the Chemosynthetic Riftia pachyptila Symbiosis
- (2019) Tjorven Hinzke et al. mBio
- The mitochondrial genome of the deep-sea tubeworm Paraescarpia echinospica (Siboglinidae, Annelida) and its phylogenetic implications
- (2018) Yanan Sun et al. Mitochondrial DNA Part B-Resources
- Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
- (2018) Michael J. Roach et al. BMC BIOINFORMATICS
- Salmon provides fast and bias-aware quantification of transcript expression
- (2017) Rob Patro et al. NATURE METHODS
- Complex heatmaps reveal patterns and correlations in multidimensional genomic data
- (2016) Zuguang Gu et al. BIOINFORMATICS
- Evolution of Sulfur Binding by Hemoglobin in Siboglinidae (Annelida) with Special Reference to Bone-Eating Worms, Osedax
- (2016) Damien S. Waits et al. JOURNAL OF MOLECULAR EVOLUTION
- The complete mitochondrial genome sequence of the tubeworm Lamellibrachia satsuma and structural conservation in the mitochondrial genome control regions of Order Sabellida
- (2016) Ajit Kumar Patra et al. Marine Genomics
- Phylogenetic relationship between symbionts of tubeworm Lamellibrachia satsuma and the sediment microbial community in Kagoshima Bay
- (2016) Ajit Kumar Patra et al. Ocean Science Journal
- Current advances in the novel functions of hypoxia-inducible factor and prolyl hydroxylase in invertebrates
- (2015) L. Wang et al. INSECT MOLECULAR BIOLOGY
- StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
- (2015) Mihaela Pertea et al. NATURE BIOTECHNOLOGY
- HISAT: a fast spliced aligner with low memory requirements
- (2015) Daehwan Kim et al. NATURE METHODS
- LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads
- (2015) René L. Warren et al. GigaScience
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- HoxandParaHoxgenes: A review on molluscs
- (2014) Maria Assunta Biscotti et al. GENESIS
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- The genomes of four tapeworm species reveal adaptations to parasitism
- (2013) Isheng J. Tsai et al. NATURE
- The lysosome: from waste bag to potential therapeutic target
- (2013) Hanna Appelqvist et al. Journal of Molecular Cell Biology
- Four invertebrate-type lysozyme genes from triangle-shell pearl mussel (Hyriopsis cumingii)
- (2012) Qian Ren et al. FISH & SHELLFISH IMMUNOLOGY
- Insights into bilaterian evolution from three spiralian genomes
- (2012) Oleg Simakov et al. NATURE
- Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
- (2012) Davis J. McCarthy et al. NUCLEIC ACIDS RESEARCH
- Pathogen Recognition by the Innate Immune System
- (2011) Himanshu Kumar et al. INTERNATIONAL REVIEWS OF IMMUNOLOGY
- New Perspectives on the Ecology and Evolution of Siboglinid Tubeworms
- (2011) Ana Hilário et al. PLoS One
- The role of pattern-recognition receptors in innate immunity: update on Toll-like receptors
- (2010) Taro Kawai et al. NATURE IMMUNOLOGY
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Insect chitinase and chitinase-like proteins
- (2009) Yasuyuki Arakane et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Serine proteases
- (2009) Enrico Di Cera IUBMB LIFE
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
- Regulation of Oxygen Homeostasis by Hypoxia-Inducible Factor 1
- (2009) Gregg L. Semenza PHYSIOLOGY
- Domain organization and phylogenetic analysis of proteins from the chitin deacetylase gene family of Tribolium castaneum and three other species of insects
- (2008) Radhika Dixit et al. INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY
- Turning a hobby into a job: How duplicated genes find new functions
- (2008) Gavin C. Conant et al. NATURE REVIEWS GENETICS
- Symbiotic diversity in marine animals: the art of harnessing chemosynthesis
- (2008) Nicole Dubilier et al. NATURE REVIEWS MICROBIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now